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All interfaces > All interologs > Interface groups > group139 > 1VQ8_F_0 vs 3LWR_C_D

Interface analysis


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Common contacts -

1VQ8_F
1VQ8_0
3LWR_C
3LWR_D
Conserved?
F:55 [GLN] 0:263 [U] C:59 [ASP] D:30 [U] ✔
F:56 [PRO] 0:263 [U] C:60 [PRO] D:30 [U] ✔
F:53 [ASP] 0:263 [U] C:57 [ASP] D:30 [U] ✔
F:31 [LYS] 0:246 [G] C:35 [LYS] D:24 [G] ✔
F:31 [LYS] 0:247 [A] C:35 [LYS] D:25 [A] ✔
F:31 [LYS] 0:262 [A] C:35 [LYS] D:29 [A] ✔
F:31 [LYS] 0:264 [G] C:35 [LYS] D:31 [G] ✔
F:92 [GLY] 0:262 [A] C:96 [ALA] D:29 [A] ✔
F:92 [GLY] 0:263 [U] C:96 [ALA] D:30 [U] ✔
F:59 [ILE] 0:263 [U] C:63 [ILE] D:30 [U] ✔
F:35 [GLU] 0:246 [G] C:39 [GLU] D:24 [G] ✔
F:35 [GLU] 0:262 [A] C:39 [GLU] D:29 [A] ✔
F:35 [GLU] 0:264 [G] C:39 [GLU] D:31 [G] ✔
F:94 [ALA] 0:262 [A] C:98 [ALA] D:29 [A] ✔
F:94 [ALA] 0:263 [U] C:98 [ALA] D:30 [U] ✔
F:32 [GLY] 0:262 [A] C:36 [GLY] D:29 [A] ✔
F:32 [GLY] 0:263 [U] C:36 [GLY] D:30 [U] ✔
F:32 [GLY] 0:264 [G] C:36 [GLY] D:31 [G] ✔
F:30 [LYS] 0:246 [G] C:34 [ARG] D:24 [G] ✔
F:38 [LYS] 0:243 [A] C:42 [LYS] D:21 [G] ✔
F:38 [LYS] 0:244 [C] C:42 [LYS] D:22 [G] ✔
F:89 [LEU] 0:262 [A] C:93 [ILE] D:29 [A] ✔
F:95 [ALA] 0:263 [U] C:99 [SER] D:30 [U] ✔
F:54 [VAL] 0:263 [U] C:58 [VAL] D:30 [U] ✔
F:34 [ASN] 0:243 [A] C:38 [ASN] D:21 [G] ✔
F:34 [ASN] 0:246 [G] C:38 [ASN] D:24 [G] ✔
F:34 [ASN] 0:264 [G] C:38 [ASN] D:31 [G] ✔
F:93 [SER] 0:262 [A] C:97 [ALA] D:29 [A] ✔
F:93 [SER] 0:263 [U] C:97 [ALA] D:30 [U] ✔
F:33 [THR] 0:262 [A] C:37 [THR] D:29 [A] ✔
F:33 [THR] 0:263 [U] C:37 [THR] D:30 [U] ✔
F:33 [THR] 0:264 [G] C:37 [THR] D:31 [G] ✔
F:91 [VAL] 0:261 [A] C:95 [VAL] D:28 [A] ✔
F:91 [VAL] 0:262 [A] C:95 [VAL] D:29 [A] ✔
F:42 [ARG] 0:244 [C] C:46 [ARG] D:22 [G] ✔
F:42 [ARG] 0:245 [C] C:46 [ARG] D:23 [U] ✔
F:80 [GLN] 0:263 [U] C:84 [LYS] D:30 [U] ✔
F:90 [GLU] 0:261 [A] C:94 [GLU] D:28 [A] ❌ 3LWR_C_D
F:38 [LYS] 0:246 [G] C:42 [LYS] D:24 [G] ❌ 3LWR_C_D
F:42 [ARG] 0:243 [A] C:46 [ARG] D:21 [G] ❌ 3LWR_C_D
F:34 [ASN] 0:244 [C] C:38 [ASN] D:22 [G] ❌ 1VQ8_F_0
F:34 [ASN] 0:263 [U] C:38 [ASN] D:30 [U] ❌ 1VQ8_F_0
F:38 [LYS] 0:242 [A] C:42 [LYS] D:20 [C] ❌ 3LWR_D:20 no longer at interface
F:81 [ASP] 0:260 [C] C:85 [LYS] D:27 [C] ❌ 1VQ8_F:81, 1VQ8_0:260 no longer at interface
F:90 [GLU] 0:260 [C] C:94 [GLU] D:27 [C] ❌ 1VQ8_0:260 no longer at interface
F:91 [VAL] 0:260 [C] C:95 [VAL] D:27 [C] ❌ 1VQ8_0:260 no longer at interface
F:36 [THR] 0:264 [G] C:40 [THR] D:31 [G] ❌ 1VQ8_F:36 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
L30e-like 0.81 0.55 0.60 0.97 0.3 1.0 0.9 0.87 0.86 0.50 0.50


Other pairs involving 1VQ8_F_0 or 3LWR_C_D

Total number of entries: 24

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1JJ2_F_0 1VQ8_F_0 0.99 1.0 0.29 1.0 L30e-like Archaeal large subunit ribosomal RNA compare
1JJ2_F_0 3LWR_C_D 0.88 0.8 0.7 0.6 L30e-like compare
1VQ8_F_0 2HVY_D_E 0.95 0.79 0.53 0.56 L30e-like compare
1VQ8_F_0 6AZ3_G_1,7 0.70 0.68 2.29 0.19 L30e-like compare
1VQ8_F_0 5XTM_A_B 0.75 0.75 1.28 0.33 L30e-like compare
1VQ8_F_0 7OZQ_A_H 0.91 0.88 0.58 0.5 L30e-like compare
1VQ8_F_0 1YHQ_F_0 0.99 1.0 0.19 0.9 L30e-like Archaeal large subunit ribosomal RNA compare
1VQ8_F_0 3HAX_D_E 0.99 0.79 0.77 0.56 L30e-like compare
1VQ8_F_0 7O7Y_BG_B5,B8 0.59 0.94 2.24 0.24 L30e-like compare
1VQ8_F_0 4BW0_B_A 0.88 0.94 0.47 0.44 L30e-like compare
1VQ8_F_0 3LWR_C_D 0.87 0.81 0.55 0.6 L30e-like compare
1VQ8_F_0 6Q8U_C_A,B 0.91 0.85 0.69 0.44 L30e-like compare
1YHQ_F_0 3LWR_C_D 0.94 0.8 0.53 0.67 L30e-like compare
2HVY_D_E 3LWR_C_D 0.91 0.92 0.54 0.89 L30e-like compare
3HAX_D_E 3LWR_C_D 0.90 0.97 0.42 0.89 L30e-like compare
3LWR_C_D 6Q8U_C_A,B 0.79 0.83 0.49 0.56 L30e-like compare
3LWR_C_D 6AZ3_G_1,7 0.66 0.73 1.54 0.26 L30e-like compare
3LWR_C_D 7O7Y_Bc_B5 0.79 0.64 1.75 0.13 L30e-like compare
3LWR_C_D 7OZQ_A_H 0.78 0.84 0.32 0.38 L30e-like compare
3LWR_C_D 7O7Y_Al_A2 0.88 0.6 1.41 0.2 L30e-like compare
3LWR_C_D 4BW0_B_A 0.78 0.89 0.54 0.56 L30e-like compare
3LWR_C_D 5XTM_A_B 0.83 0.76 0.5 0.22 L30e-like compare
3LWR_C_D 6AZ3_d_3 0.69 0.6 1.53 0.17 L30e-like compare
3LWR_C_D 7O7Y_BG_B5,B8 0.53 0.74 1.47 0.35 L30e-like compare