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All interfaces > All interologs > Interface groups > group139 > 1VQ8_F_0 vs 5XTM_A_B

Interface analysis


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Common contacts -

1VQ8_F
1VQ8_0
5XTM_A
5XTM_B
Conserved?
F:31 [LYS] 0:246 [G] A:35 [LYS] B:31 [G] ✔
F:31 [LYS] 0:247 [A] A:35 [LYS] B:32 [A] ✔
F:35 [GLU] 0:246 [G] A:39 [GLU] B:31 [G] ✔
F:30 [LYS] 0:246 [G] A:34 [ARG] B:31 [G] ✔
F:38 [LYS] 0:243 [A] A:42 [LYS] B:29 [C] ✔
F:38 [LYS] 0:246 [G] A:42 [LYS] B:31 [G] ✔
F:34 [ASN] 0:246 [G] A:38 [ASN] B:31 [G] ✔
F:42 [ARG] 0:243 [A] A:46 [ARG] B:29 [C] ✔
F:42 [ARG] 0:245 [C] A:46 [ARG] B:30 [C] ✔
F:34 [ASN] 0:243 [A] A:38 [ASN] B:29 [C] ❌ 5XTM_A_B
F:38 [LYS] 0:245 [C] A:42 [LYS] B:30 [C] ❌ 1VQ8_F_0
F:38 [LYS] 0:242 [A] A:42 [LYS] B:28 [A] ❌ 5XTM_B:28 no longer at interface
F:90 [GLU] 0:249 [G] A:94 [GLU] B:33 [G] ❌ 1VQ8_0:249 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
L30e-like 0.75 1.28 0.33 0.97 0.26 1.0 0.44 0.75 0.85 0.44 0.50


Other pairs involving 1VQ8_F_0 or 5XTM_A_B

Total number of entries: 23

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1JJ2_F_0 5XTM_A_B 0.94 0.78 0.56 0.22 L30e-like compare
1JJ2_F_0 1VQ8_F_0 0.99 1.0 0.29 1.0 L30e-like Archaeal large subunit ribosomal RNA compare
5XTM_A_B 6AZ3_d_3 0.80 0.58 1.46 0.17 L30e-like compare
5XTM_A_B 6Q8U_C_A,B 0.95 0.79 0.59 0.22 L30e-like compare
5XTM_A_B 7O7Y_Al_A2 0.77 0.73 1.67 0.24 L30e-like compare
5XTM_A_B 6AZ3_G_1,7 0.91 0.7 1.59 0.27 L30e-like compare
5XTM_A_B 7O7Y_BG_B5,B8 0.68 0.71 1.4 0.22 L30e-like compare
5XTM_A_B 7O7Y_Bc_B5 0.79 0.62 1.62 0.14 L30e-like compare
5XTM_A_B 7OZQ_A_H 1.00 0.85 0.21 0.38 L30e-like compare
3LWR_C_D 5XTM_A_B 0.83 0.76 0.5 0.22 L30e-like compare
1YHQ_F_0 5XTM_A_B 0.93 0.78 0.72 0.22 L30e-like compare
4BW0_B_A 5XTM_A_B 0.94 0.87 0.57 0.22 L30e-like compare
1VQ8_F_0 2HVY_D_E 0.95 0.79 0.53 0.56 L30e-like compare
1VQ8_F_0 6AZ3_G_1,7 0.70 0.68 2.29 0.19 L30e-like compare
1VQ8_F_0 5XTM_A_B 0.75 0.75 1.28 0.33 L30e-like compare
1VQ8_F_0 7OZQ_A_H 0.91 0.88 0.58 0.5 L30e-like compare
1VQ8_F_0 1YHQ_F_0 0.99 1.0 0.19 0.9 L30e-like Archaeal large subunit ribosomal RNA compare
1VQ8_F_0 3HAX_D_E 0.99 0.79 0.77 0.56 L30e-like compare
1VQ8_F_0 7O7Y_BG_B5,B8 0.59 0.94 2.24 0.24 L30e-like compare
1VQ8_F_0 4BW0_B_A 0.88 0.94 0.47 0.44 L30e-like compare
1VQ8_F_0 3LWR_C_D 0.87 0.81 0.55 0.6 L30e-like compare
1VQ8_F_0 6Q8U_C_A,B 0.91 0.85 0.69 0.44 L30e-like compare
2HVY_D_E 5XTM_A_B 0.92 0.78 0.22 0.22 L30e-like compare