RNAprotDB

All interfaces > All interologs > Interface groups > group139 > 1VQ8_F_0 vs 6AZ3_G_1,7

Interface analysis


mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Structure
Structure (with hetatm)
Chain
Chainbow

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show interface as licorice

Common contacts -

1VQ8_F
1VQ8_0
6AZ3_G
6AZ3_1,7
Conserved?
F:55 [GLN] 0:263 [U] G:243 [ASP] 1:146 [U] ✔
F:56 [PRO] 0:263 [U] G:244 [PRO] 1:146 [U] ✔
F:53 [ASP] 0:263 [U] G:241 [ASN] 1:146 [U] ✔
F:31 [LYS] 0:262 [A] G:219 [THR] 1:145 [U] ✔
F:31 [LYS] 0:264 [G] G:219 [THR] 1:147 [G] ✔
F:92 [GLY] 0:262 [A] G:279 [THR] 1:145 [U] ✔
F:92 [GLY] 0:263 [U] G:279 [THR] 1:146 [U] ✔
F:59 [ILE] 0:263 [U] G:247 [LEU] 1:146 [U] ✔
F:35 [GLU] 0:246 [G] G:223 [GLU] 1:120 [G] ✔
F:35 [GLU] 0:262 [A] G:223 [GLU] 1:145 [U] ✔
F:35 [GLU] 0:264 [G] G:223 [GLU] 1:147 [G] ✔
F:94 [ALA] 0:263 [U] G:281 [THR] 1:146 [U] ✔
F:32 [GLY] 0:262 [A] G:220 [GLY] 1:145 [U] ✔
F:32 [GLY] 0:263 [U] G:220 [GLY] 1:146 [U] ✔
F:32 [GLY] 0:264 [G] G:220 [GLY] 1:147 [G] ✔
F:38 [LYS] 0:244 [C] G:226 [ARG] 1:118 [C] ✔
F:38 [LYS] 0:246 [G] G:226 [ARG] 1:120 [G] ✔
F:95 [ALA] 0:263 [U] G:282 [CYS] 1:146 [U] ✔
F:54 [VAL] 0:263 [U] G:242 [VAL] 1:146 [U] ✔
F:34 [ASN] 0:246 [G] G:222 [GLN] 1:120 [G] ✔
F:34 [ASN] 0:264 [G] G:222 [GLN] 1:147 [G] ✔
F:93 [SER] 0:263 [U] G:280 [ALA] 1:146 [U] ✔
F:33 [THR] 0:262 [A] G:221 [LEU] 1:145 [U] ✔
F:33 [THR] 0:263 [U] G:221 [LEU] 1:146 [U] ✔
F:33 [THR] 0:264 [G] G:221 [LEU] 1:147 [G] ✔
F:91 [VAL] 0:261 [A] G:278 [LYS] 1:144 [G] ✔
F:42 [ARG] 0:244 [C] G:230 [LYS] 1:118 [C] ✔
F:42 [ARG] 0:245 [C] G:230 [LYS] 1:119 [C] ✔
F:80 [GLN] 0:263 [U] G:268 [MET] 1:146 [U] ✔
F:90 [GLU] 0:261 [A] G:277 [ARG] 1:144 [G] ❌ 6AZ3_G_1,7
F:31 [LYS] 0:246 [G] G:219 [THR] 1:120 [G] ❌ 6AZ3_G_1,7
F:31 [LYS] 0:247 [A] G:219 [THR] 1:121 [A] ❌ 6AZ3_G_1,7
F:94 [ALA] 0:262 [A] G:281 [THR] 1:145 [U] ❌ 6AZ3_G_1,7
F:38 [LYS] 0:242 [A] G:226 [ARG] 1:115 [U] ❌ 6AZ3_G_1,7
F:93 [SER] 0:262 [A] G:280 [ALA] 1:145 [U] ❌ 6AZ3_G_1,7
F:91 [VAL] 0:262 [A] G:278 [LYS] 1:145 [U] ❌ 6AZ3_G_1,7
F:34 [ASN] 0:242 [A] G:222 [GLN] 1:115 [U] ❌ 1VQ8_F_0
F:34 [ASN] 0:245 [C] G:222 [GLN] 1:119 [C] ❌ 1VQ8_F_0
F:38 [LYS] 0:245 [C] G:226 [ARG] 1:119 [C] ❌ 1VQ8_F_0
F:90 [GLU] 0:262 [A] G:277 [ARG] 1:145 [U] ❌ 1VQ8_F_0
F:38 [LYS] 0:243 [A] G:226 [ARG] 1:116 [U] ❌ 6AZ3_1:116 no longer at interface
F:34 [ASN] 0:243 [A] G:222 [GLN] 1:116 [U] ❌ 6AZ3_1:116 no longer at interface
F:42 [ARG] 0:243 [A] G:230 [LYS] 1:116 [U] ❌ 6AZ3_1:116 no longer at interface
F:91 [VAL] 0:260 [C] G:278 [LYS] 1:143 [A] ❌ 1VQ8_0:260 no longer at interface
F:30 [LYS] 0:246 [G] G:218 [VAL] 1:120 [G] ❌ 6AZ3_G:218 no longer at interface
F:89 [LEU] 0:262 [A] G:276 [GLY] 1:145 [U] ❌ 6AZ3_G:276 no longer at interface

logo_download Export the table of contacts

Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
L30e-like 0.68 2.29 0.19 0.87 0.7 0.9 0.9 0.70 0.53 0.35 0.35


Other pairs involving 1VQ8_F_0 or 6AZ3_G_1,7

Total number of entries: 21

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1JJ2_F_0 1VQ8_F_0 0.99 1.0 0.29 1.0 L30e-like Archaeal large subunit ribosomal RNA compare
1JJ2_F_0 6AZ3_G_1,7 0.72 0.68 2.27 0.19 L30e-like compare
5XTM_A_B 6AZ3_G_1,7 0.91 0.7 1.59 0.27 L30e-like compare
3LWR_C_D 6AZ3_G_1,7 0.66 0.73 1.54 0.26 L30e-like compare
1YHQ_F_0 6AZ3_G_1,7 0.71 0.68 2.26 0.19 L30e-like compare
4BW0_B_A 6AZ3_G_1,7 0.69 0.85 1.34 0.2 L30e-like compare
1VQ8_F_0 2HVY_D_E 0.95 0.79 0.53 0.56 L30e-like compare
1VQ8_F_0 6AZ3_G_1,7 0.70 0.68 2.29 0.19 L30e-like compare
1VQ8_F_0 5XTM_A_B 0.75 0.75 1.28 0.33 L30e-like compare
1VQ8_F_0 7OZQ_A_H 0.91 0.88 0.58 0.5 L30e-like compare
1VQ8_F_0 1YHQ_F_0 0.99 1.0 0.19 0.9 L30e-like Archaeal large subunit ribosomal RNA compare
1VQ8_F_0 3HAX_D_E 0.99 0.79 0.77 0.56 L30e-like compare
1VQ8_F_0 7O7Y_BG_B5,B8 0.59 0.94 2.24 0.24 L30e-like compare
1VQ8_F_0 4BW0_B_A 0.88 0.94 0.47 0.44 L30e-like compare
1VQ8_F_0 3LWR_C_D 0.87 0.81 0.55 0.6 L30e-like compare
1VQ8_F_0 6Q8U_C_A,B 0.91 0.85 0.69 0.44 L30e-like compare
2HVY_D_E 6AZ3_G_1,7 0.69 0.72 1.31 0.3 L30e-like compare
3HAX_D_E 6AZ3_G_1,7 0.66 0.74 1.4 0.26 L30e-like compare
6AZ3_G_1,7 6Q8U_C_A,B 0.83 0.77 1.38 0.2 L30e-like compare
6AZ3_G_1,7 7OZQ_A_H 0.68 0.8 1.4 0.27 L30e-like compare
6AZ3_G_1,7 7O7Y_BG_B5,B8 0.69 0.93 1.08 0.38 L30e-like 5.8S ribosomal RNA & Eukaryotic large subunit ribosomal RNA compare