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All interfaces > All interologs > Interface groups > group139 > 1VQ8_F_0 vs 6Q8U_C_A,B

Interface analysis


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Common contacts -

1VQ8_F
1VQ8_0
6Q8U_C
6Q8U_A,B
Conserved?
F:55 [GLN] 0:263 [U] C:54 [ASP] B:28 [A] ✔
F:56 [PRO] 0:263 [U] C:55 [PRO] B:28 [A] ✔
F:90 [GLU] 0:261 [A] C:89 [GLU] B:26 [G] ✔
F:31 [LYS] 0:246 [G] C:30 [LYS] A:16 [G] ✔
F:31 [LYS] 0:247 [A] C:30 [LYS] A:17 [A] ✔
F:31 [LYS] 0:262 [A] C:30 [LYS] B:27 [A] ✔
F:31 [LYS] 0:264 [G] C:30 [LYS] B:29 [G] ✔
F:92 [GLY] 0:262 [A] C:91 [PRO] B:27 [A] ✔
F:92 [GLY] 0:263 [U] C:91 [PRO] B:28 [A] ✔
F:59 [ILE] 0:263 [U] C:58 [ILE] B:28 [A] ✔
F:35 [GLU] 0:246 [G] C:34 [GLU] A:16 [G] ✔
F:35 [GLU] 0:262 [A] C:34 [GLU] B:27 [A] ✔
F:35 [GLU] 0:264 [G] C:34 [GLU] B:29 [G] ✔
F:94 [ALA] 0:262 [A] C:93 [ALA] B:27 [A] ✔
F:94 [ALA] 0:263 [U] C:93 [ALA] B:28 [A] ✔
F:32 [GLY] 0:262 [A] C:31 [GLY] B:27 [A] ✔
F:32 [GLY] 0:263 [U] C:31 [GLY] B:28 [A] ✔
F:32 [GLY] 0:264 [G] C:31 [GLY] B:29 [G] ✔
F:30 [LYS] 0:246 [G] C:29 [LYS] A:16 [G] ✔
F:38 [LYS] 0:244 [C] C:37 [LYS] A:14 [G] ✔
F:38 [LYS] 0:246 [G] C:37 [LYS] A:16 [G] ✔
F:89 [LEU] 0:262 [A] C:88 [ILE] B:27 [A] ✔
F:95 [ALA] 0:263 [U] C:94 [SER] B:28 [A] ✔
F:34 [ASN] 0:246 [G] C:33 [ASN] A:16 [G] ✔
F:34 [ASN] 0:264 [G] C:33 [ASN] B:29 [G] ✔
F:93 [SER] 0:262 [A] C:92 [CYS] B:27 [A] ✔
F:93 [SER] 0:263 [U] C:92 [CYS] B:28 [A] ✔
F:33 [THR] 0:262 [A] C:32 [THR] B:27 [A] ✔
F:33 [THR] 0:263 [U] C:32 [THR] B:28 [A] ✔
F:33 [THR] 0:264 [G] C:32 [THR] B:29 [G] ✔
F:91 [VAL] 0:261 [A] C:90 [VAL] B:26 [G] ✔
F:91 [VAL] 0:262 [A] C:90 [VAL] B:27 [A] ✔
F:42 [ARG] 0:244 [C] C:41 [ARG] A:14 [G] ✔
F:42 [ARG] 0:245 [C] C:41 [ARG] A:15 [G] ✔
F:80 [GLN] 0:263 [U] C:79 [LYS] B:28 [A] ✔
F:34 [ASN] 0:263 [U] C:33 [ASN] B:28 [A] ❌ 1VQ8_F_0
F:34 [ASN] 0:245 [C] C:33 [ASN] A:15 [G] ❌ 1VQ8_F_0
F:38 [LYS] 0:245 [C] C:37 [LYS] A:15 [G] ❌ 1VQ8_F_0
F:38 [LYS] 0:242 [A] C:37 [LYS] A:13 [G] ❌ 6Q8U_A:13 no longer at interface
F:90 [GLU] 0:249 [G] C:89 [GLU] A:18 [G] ❌ 1VQ8_0:249 no longer at interface
F:53 [ASP] 0:263 [U] C:52 [ASP] B:28 [A] ❌ 6Q8U_C:52 no longer at interface
F:54 [VAL] 0:263 [U] C:53 [VAL] B:28 [A] ❌ 6Q8U_C:53 no longer at interface
F:36 [THR] 0:264 [G] C:35 [THR] B:29 [G] ❌ 1VQ8_F:36 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
L30e-like 0.85 0.69 0.44 0.97 0.26 0.95 0.89 0.91 0.84 0.72 0.62


Other pairs involving 1VQ8_F_0 or 6Q8U_C_A,B

Total number of entries: 24

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1JJ2_F_0 6Q8U_C_A,B 0.89 0.85 0.61 0.44 L30e-like compare
1JJ2_F_0 1VQ8_F_0 0.99 1.0 0.29 1.0 L30e-like Archaeal large subunit ribosomal RNA compare
5XTM_A_B 6Q8U_C_A,B 0.95 0.79 0.59 0.22 L30e-like compare
3LWR_C_D 6Q8U_C_A,B 0.79 0.83 0.49 0.56 L30e-like compare
6AZ3_d_3 6Q8U_C_A,B 0.71 0.68 1.69 0.17 L30e-like compare
1YHQ_F_0 6Q8U_C_A,B 0.88 0.85 0.58 0.44 L30e-like compare
6Q8U_C_A,B 7O7Y_Al_A2 0.87 0.66 1.35 0.22 L30e-like compare
6Q8U_C_A,B 7O7Y_BG_B5,B8 0.60 0.8 1.18 0.3 L30e-like compare
6Q8U_C_A,B 7OZQ_A_H 0.92 0.87 0.5 0.5 L30e-like compare
6Q8U_C_A,B 7O7Y_Bc_B5 0.78 0.71 1.79 0.15 L30e-like compare
4BW0_B_A 6Q8U_C_A,B 0.99 0.95 0.45 1.0 L30e-like compare
1VQ8_F_0 2HVY_D_E 0.95 0.79 0.53 0.56 L30e-like compare
1VQ8_F_0 6AZ3_G_1,7 0.70 0.68 2.29 0.19 L30e-like compare
1VQ8_F_0 5XTM_A_B 0.75 0.75 1.28 0.33 L30e-like compare
1VQ8_F_0 7OZQ_A_H 0.91 0.88 0.58 0.5 L30e-like compare
1VQ8_F_0 1YHQ_F_0 0.99 1.0 0.19 0.9 L30e-like Archaeal large subunit ribosomal RNA compare
1VQ8_F_0 3HAX_D_E 0.99 0.79 0.77 0.56 L30e-like compare
1VQ8_F_0 7O7Y_BG_B5,B8 0.59 0.94 2.24 0.24 L30e-like compare
1VQ8_F_0 4BW0_B_A 0.88 0.94 0.47 0.44 L30e-like compare
1VQ8_F_0 3LWR_C_D 0.87 0.81 0.55 0.6 L30e-like compare
1VQ8_F_0 6Q8U_C_A,B 0.91 0.85 0.69 0.44 L30e-like compare
2HVY_D_E 6Q8U_C_A,B 0.84 0.84 0.4 0.56 L30e-like compare
3HAX_D_E 6Q8U_C_A,B 0.89 0.84 0.42 0.56 L30e-like compare
6AZ3_G_1,7 6Q8U_C_A,B 0.83 0.77 1.38 0.2 L30e-like compare