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All interfaces > All interologs > Interface groups > group139 > 1VQ8_F_0 vs 7OZQ_A_H

Interface analysis


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Common contacts -

1VQ8_F
1VQ8_0
7OZQ_A
7OZQ_H
Conserved?
F:55 [GLN] 0:263 [U] A:58 [ASP] H:29 [U] ✔
F:56 [PRO] 0:263 [U] A:59 [PRO] H:29 [U] ✔
F:90 [GLU] 0:261 [A] A:93 [GLU] H:27 [G] ✔
F:53 [ASP] 0:263 [U] A:56 [ASP] H:29 [U] ✔
F:31 [LYS] 0:262 [A] A:34 [LYS] H:28 [A] ✔
F:31 [LYS] 0:264 [G] A:34 [LYS] H:30 [G] ✔
F:92 [GLY] 0:262 [A] A:95 [ALA] H:28 [A] ✔
F:92 [GLY] 0:263 [U] A:95 [ALA] H:29 [U] ✔
F:59 [ILE] 0:263 [U] A:62 [ILE] H:29 [U] ✔
F:35 [GLU] 0:246 [G] A:38 [GLU] H:5 [U] ✔
F:35 [GLU] 0:262 [A] A:38 [GLU] H:28 [A] ✔
F:35 [GLU] 0:264 [G] A:38 [GLU] H:30 [G] ✔
F:94 [ALA] 0:262 [A] A:97 [ALA] H:28 [A] ✔
F:94 [ALA] 0:263 [U] A:97 [ALA] H:29 [U] ✔
F:32 [GLY] 0:262 [A] A:35 [GLY] H:28 [A] ✔
F:32 [GLY] 0:263 [U] A:35 [GLY] H:29 [U] ✔
F:32 [GLY] 0:264 [G] A:35 [GLY] H:30 [G] ✔
F:30 [LYS] 0:246 [G] A:33 [ARG] H:5 [U] ✔
F:38 [LYS] 0:244 [C] A:41 [LYS] H:3 [A] ✔
F:89 [LEU] 0:262 [A] A:92 [ILE] H:28 [A] ✔
F:95 [ALA] 0:263 [U] A:98 [SER] H:29 [U] ✔
F:54 [VAL] 0:263 [U] A:57 [VAL] H:29 [U] ✔
F:34 [ASN] 0:264 [G] A:37 [ASN] H:30 [G] ✔
F:93 [SER] 0:262 [A] A:96 [ALA] H:28 [A] ✔
F:93 [SER] 0:263 [U] A:96 [ALA] H:29 [U] ✔
F:33 [THR] 0:262 [A] A:36 [THR] H:28 [A] ✔
F:33 [THR] 0:263 [U] A:36 [THR] H:29 [U] ✔
F:33 [THR] 0:264 [G] A:36 [THR] H:30 [G] ✔
F:91 [VAL] 0:261 [A] A:94 [VAL] H:27 [G] ✔
F:91 [VAL] 0:262 [A] A:94 [VAL] H:28 [A] ✔
F:42 [ARG] 0:244 [C] A:45 [ARG] H:3 [A] ✔
F:42 [ARG] 0:245 [C] A:45 [ARG] H:4 [C] ✔
F:80 [GLN] 0:263 [U] A:83 [LYS] H:29 [U] ✔
F:31 [LYS] 0:246 [G] A:34 [LYS] H:5 [U] ❌ 7OZQ_A_H
F:38 [LYS] 0:246 [G] A:41 [LYS] H:5 [U] ❌ 7OZQ_A_H
F:34 [ASN] 0:246 [G] A:37 [ASN] H:5 [U] ❌ 7OZQ_A_H
F:30 [LYS] 0:245 [C] A:33 [ARG] H:4 [C] ❌ 1VQ8_F_0
F:34 [ASN] 0:263 [U] A:37 [ASN] H:29 [U] ❌ 1VQ8_F_0
F:38 [LYS] 0:245 [C] A:41 [LYS] H:4 [C] ❌ 1VQ8_F_0
F:31 [LYS] 0:247 [A] A:34 [LYS] H:6 [A] ❌ 7OZQ_H:6 no longer at interface
F:38 [LYS] 0:242 [A] A:41 [LYS] H:1 [G] ❌ 7OZQ_H:1 no longer at interface
F:38 [LYS] 0:243 [A] A:41 [LYS] H:2 [U] ❌ 7OZQ_H:2 no longer at interface
F:34 [ASN] 0:243 [A] A:37 [ASN] H:2 [U] ❌ 7OZQ_H:2 no longer at interface
F:42 [ARG] 0:243 [A] A:45 [ARG] H:2 [U] ❌ 7OZQ_H:2 no longer at interface
F:90 [GLU] 0:249 [G] A:93 [GLU] H:7 [G] ❌ 1VQ8_0:249 no longer at interface
F:36 [THR] 0:264 [G] A:39 [THR] H:30 [G] ❌ 1VQ8_F:36 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
L30e-like 0.88 0.58 0.50 0.97 0.38 1.0 0.88 0.91 0.87 0.56 0.54


Other pairs involving 1VQ8_F_0 or 7OZQ_A_H

Total number of entries: 23

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1JJ2_F_0 1VQ8_F_0 0.99 1.0 0.29 1.0 L30e-like Archaeal large subunit ribosomal RNA compare
1VQ8_F_0 1YHQ_F_0 0.99 1.0 0.19 0.9 L30e-like Archaeal large subunit ribosomal RNA compare
1VQ8_F_0 2HVY_D_E 0.95 0.79 0.53 0.56 L30e-like compare
1VQ8_F_0 3HAX_D_E 0.99 0.79 0.77 0.56 L30e-like compare
1VQ8_F_0 3LWR_C_D 0.87 0.81 0.55 0.6 L30e-like compare
1VQ8_F_0 4BW0_B_A 0.88 0.94 0.47 0.44 L30e-like compare
1VQ8_F_0 5XTM_A_B 0.75 0.75 1.28 0.33 L30e-like compare
1VQ8_F_0 6AZ3_G_1,7 0.70 0.68 2.29 0.19 L30e-like compare
1VQ8_F_0 6Q8U_C_A,B 0.91 0.85 0.69 0.44 L30e-like compare
1VQ8_F_0 7O7Y_BG_B5,B8 0.59 0.94 2.24 0.24 L30e-like compare
1JJ2_F_0 7OZQ_A_H 0.91 0.88 0.58 0.5 L30e-like compare
5XTM_A_B 7OZQ_A_H 1.00 0.85 0.21 0.38 L30e-like compare
3LWR_C_D 7OZQ_A_H 0.78 0.84 0.32 0.38 L30e-like compare
6AZ3_d_3 7OZQ_A_H 0.71 0.62 1.56 0.17 L30e-like compare
1YHQ_F_0 7OZQ_A_H 0.91 0.88 0.58 0.5 L30e-like compare
6Q8U_C_A,B 7OZQ_A_H 0.92 0.87 0.5 0.5 L30e-like compare
4BW0_B_A 7OZQ_A_H 0.91 0.9 0.62 0.5 L30e-like compare
1VQ8_F_0 7OZQ_A_H 0.91 0.88 0.58 0.5 L30e-like compare
7O7Y_BG_B5,B8 7OZQ_A_H 0.65 0.83 1.34 0.36 L30e-like compare
2HVY_D_E 7OZQ_A_H 0.83 0.85 0.26 0.38 L30e-like compare
3HAX_D_E 7OZQ_A_H 0.89 0.86 0.25 0.38 L30e-like compare
6AZ3_G_1,7 7OZQ_A_H 0.68 0.8 1.4 0.27 L30e-like compare
7O7Y_Bc_B5 7OZQ_A_H 0.74 0.68 1.59 0.12 L30e-like compare