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All interfaces > All interologs > Interface groups > group139 > 1YHQ_F_0

Interface analysis

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
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Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

1YHQ_F
1YHQ_0
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
F:30 [LYS] 0:246 [G] 4.26 56.84
F:31 [LYS] 0:247 [A] 4.61 0:264 [G] 71.33
F:31 [LYS] 0:262 [A] 3.49 71.33
F:31 [LYS] 0:264 [G] 3.47 0:247 [A] base:BB 71.33
F:32 [GLY] 0:262 [A] 3.53 99.0
F:32 [GLY] 0:263 [U] 3.58 99.0
F:32 [GLY] 0:264 [G] 3.37 0:247 [A] 99.0
F:33 [THR] 0:262 [A] 4.15 58.33
F:33 [THR] 0:263 [U] 2.77 58.33
F:33 [THR] 0:264 [G] 3.94 0:247 [A] 58.33
F:34 [ASN] 0:243 [A] 3.03 85.09
F:34 [ASN] 0:246 [G] 3.01 base:SC 85.09
F:34 [ASN] 0:264 [G] 3.45 0:247 [A] base:BB 85.09
F:35 [GLU] 0:246 [G] 2.71 sugar:SC base/AA stacks 86.4
F:35 [GLU] 0:262 [A] 4.44 86.4
F:35 [GLU] 0:264 [G] 2.79 0:247 [A] base:BB, base:SC, base:SC 86.4
F:38 [LYS] 0:243 [A] 3.32 84.22
F:38 [LYS] 0:244 [C] 2.72 0:267 [G] 84.22
F:38 [LYS] 0:246 [G] 4.97 84.22
F:42 [ARG] 0:243 [A] 4.94 64.87
F:42 [ARG] 0:244 [C] 2.79 0:267 [G] 64.87
F:42 [ARG] 0:245 [C] 2.79 0:266 [G] 64.87
F:53 [ASP] 0:263 [U] 3.92 95.7
F:54 [VAL] 0:263 [U] 3.2 86.13
F:55 [GLN] 0:263 [U] 2.81 base:BB, base:BB 57.36
F:56 [PRO] 0:263 [U] 3.78 77.76
F:59 [ILE] 0:263 [U] 2.97 71.85
F:80 [GLN] 0:263 [U] 2.89 base:SC base/AA stacks 76.38
F:89 [LEU] 0:262 [A] 3.32 83.13
F:90 [GLU] 0:260 [C] 4.98 0:249 [G] 49.41
F:90 [GLU] 0:261 [A] 3.21 base:SC 49.41
F:91 [VAL] 0:261 [A] 3.49 83.18
F:91 [VAL] 0:262 [A] 3.02 83.18
F:92 [GLY] 0:262 [A] 3.25 sugar:BB 32.42
F:92 [GLY] 0:263 [U] 3.88 32.42
F:93 [SER] 0:262 [A] 3.37 sugar:SC 71.55
F:93 [SER] 0:263 [U] 3.31 71.55
F:94 [ALA] 0:262 [A] 4.73 82.43
F:94 [ALA] 0:263 [U] 2.73 82.43
F:95 [ALA] 0:263 [U] 4.15 71.9

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group139 1YHQ_F_0 F: 50s ribosomal protein l7ae, Haloarcula marismortui (natural) 0: 23s ribosomal RNA, Haloarcula marismortui (natural) P12743 L30e-like Archaeal large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 11

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1YHQ_F_0 7O7Y_BG_B5,B8 0.59 0.94 2.25 0.24 L30e-like compare
1YHQ_F_0 6AZ3_G_1,7 0.71 0.68 2.26 0.19 L30e-like compare
1YHQ_F_0 6Q8U_C_A,B 0.88 0.85 0.58 0.44 L30e-like compare
1YHQ_F_0 4BW0_B_A 0.88 0.94 0.45 0.44 L30e-like compare
1YHQ_F_0 7OZQ_A_H 0.91 0.88 0.58 0.5 L30e-like compare
1YHQ_F_0 5XTM_A_B 0.93 0.78 0.72 0.22 L30e-like compare
1YHQ_F_0 3LWR_C_D 0.94 0.8 0.53 0.67 L30e-like compare
1YHQ_F_0 2HVY_D_E 0.95 0.79 0.48 0.56 L30e-like compare
1YHQ_F_0 3HAX_D_E 0.97 0.8 0.77 0.56 L30e-like compare
1VQ8_F_0 1YHQ_F_0 0.99 1.0 0.19 0.9 L30e-like Archaeal large subunit ribosomal RNA compare
1JJ2_F_0 1YHQ_F_0 0.99 1.0 0.16 0.9 L30e-like Archaeal large subunit ribosomal RNA compare