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All interfaces > All interologs > Interface groups > group139 > 1YHQ_F_0 vs 5XTM_A_B

Interface analysis


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Common contacts -

1YHQ_F
1YHQ_0
5XTM_A
5XTM_B
Conserved?
F:55 [GLN] 0:263 [U] A:59 [ASP] B:19 [U] ✔
F:56 [PRO] 0:263 [U] A:60 [PRO] B:19 [U] ✔
F:90 [GLU] 0:261 [A] A:94 [GLU] B:17 [G] ✔
F:53 [ASP] 0:263 [U] A:57 [ASP] B:19 [U] ✔
F:31 [LYS] 0:262 [A] A:35 [LYS] B:18 [G] ✔
F:31 [LYS] 0:264 [G] A:35 [LYS] B:20 [G] ✔
F:92 [GLY] 0:262 [A] A:96 [ALA] B:18 [G] ✔
F:92 [GLY] 0:263 [U] A:96 [ALA] B:19 [U] ✔
F:59 [ILE] 0:263 [U] A:63 [ILE] B:19 [U] ✔
F:35 [GLU] 0:262 [A] A:39 [GLU] B:18 [G] ✔
F:35 [GLU] 0:264 [G] A:39 [GLU] B:20 [G] ✔
F:94 [ALA] 0:262 [A] A:98 [ALA] B:18 [G] ✔
F:94 [ALA] 0:263 [U] A:98 [ALA] B:19 [U] ✔
F:32 [GLY] 0:262 [A] A:36 [GLY] B:18 [G] ✔
F:32 [GLY] 0:263 [U] A:36 [GLY] B:19 [U] ✔
F:32 [GLY] 0:264 [G] A:36 [GLY] B:20 [G] ✔
F:89 [LEU] 0:262 [A] A:93 [ILE] B:18 [G] ✔
F:95 [ALA] 0:263 [U] A:99 [SER] B:19 [U] ✔
F:54 [VAL] 0:263 [U] A:58 [VAL] B:19 [U] ✔
F:34 [ASN] 0:264 [G] A:38 [ASN] B:20 [G] ✔
F:93 [SER] 0:262 [A] A:97 [ALA] B:18 [G] ✔
F:93 [SER] 0:263 [U] A:97 [ALA] B:19 [U] ✔
F:33 [THR] 0:262 [A] A:37 [THR] B:18 [G] ✔
F:33 [THR] 0:263 [U] A:37 [THR] B:19 [U] ✔
F:33 [THR] 0:264 [G] A:37 [THR] B:20 [G] ✔
F:91 [VAL] 0:261 [A] A:95 [VAL] B:17 [G] ✔
F:91 [VAL] 0:262 [A] A:95 [VAL] B:18 [G] ✔
F:80 [GLN] 0:263 [U] A:84 [LYS] B:19 [U] ✔
F:90 [GLU] 0:260 [C] A:94 [GLU] B:16 [C] ❌ 5XTM_B:16 no longer at interface
F:38 [LYS] 0:275 [G] A:42 [LYS] B:29 [C] ❌ 1YHQ_0:275 no longer at interface
F:42 [ARG] 0:275 [G] A:46 [ARG] B:29 [C] ❌ 1YHQ_0:275 no longer at interface
F:36 [THR] 0:264 [G] A:40 [THR] B:20 [G] ❌ 1YHQ_F:36 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
L30e-like 0.78 0.72 0.22 0.98 0.27 1.0 0.44 0.93 0.98 0.69 1.00


Other pairs involving 1YHQ_F_0 or 5XTM_A_B

Total number of entries: 23

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1JJ2_F_0 5XTM_A_B 0.94 0.78 0.56 0.22 L30e-like compare
1JJ2_F_0 1YHQ_F_0 0.99 1.0 0.16 0.9 L30e-like Archaeal large subunit ribosomal RNA compare
5XTM_A_B 6AZ3_d_3 0.80 0.58 1.46 0.17 L30e-like compare
5XTM_A_B 6Q8U_C_A,B 0.95 0.79 0.59 0.22 L30e-like compare
5XTM_A_B 7O7Y_Al_A2 0.77 0.73 1.67 0.24 L30e-like compare
5XTM_A_B 6AZ3_G_1,7 0.91 0.7 1.59 0.27 L30e-like compare
5XTM_A_B 7O7Y_BG_B5,B8 0.68 0.71 1.4 0.22 L30e-like compare
5XTM_A_B 7O7Y_Bc_B5 0.79 0.62 1.62 0.14 L30e-like compare
5XTM_A_B 7OZQ_A_H 1.00 0.85 0.21 0.38 L30e-like compare
3LWR_C_D 5XTM_A_B 0.83 0.76 0.5 0.22 L30e-like compare
1YHQ_F_0 6AZ3_G_1,7 0.71 0.68 2.26 0.19 L30e-like compare
1YHQ_F_0 4BW0_B_A 0.88 0.94 0.45 0.44 L30e-like compare
1YHQ_F_0 3HAX_D_E 0.97 0.8 0.77 0.56 L30e-like compare
1YHQ_F_0 6Q8U_C_A,B 0.88 0.85 0.58 0.44 L30e-like compare
1YHQ_F_0 2HVY_D_E 0.95 0.79 0.48 0.56 L30e-like compare
1YHQ_F_0 5XTM_A_B 0.93 0.78 0.72 0.22 L30e-like compare
1YHQ_F_0 3LWR_C_D 0.94 0.8 0.53 0.67 L30e-like compare
1YHQ_F_0 7O7Y_BG_B5,B8 0.59 0.94 2.25 0.24 L30e-like compare
1YHQ_F_0 7OZQ_A_H 0.91 0.88 0.58 0.5 L30e-like compare
4BW0_B_A 5XTM_A_B 0.94 0.87 0.57 0.22 L30e-like compare
1VQ8_F_0 5XTM_A_B 0.75 0.75 1.28 0.33 L30e-like compare
1VQ8_F_0 1YHQ_F_0 0.99 1.0 0.19 0.9 L30e-like Archaeal large subunit ribosomal RNA compare
2HVY_D_E 5XTM_A_B 0.92 0.78 0.22 0.22 L30e-like compare