Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
StructureStructure (with hetatm)
Chain
Chainbow
View
Focus on
InterfaceRNA
Protein
All
Show chains
Interface
show interface as licoriceCommon contacts -
2HVY_D
|
2HVY_E
|
3HAX_D
|
3HAX_E
|
Conserved?
|
---|---|---|---|---|
D:39 [GLU] | E:24 [G] | D:39 [GLU] | E:24 [G] | ✔ |
D:39 [GLU] | E:31 [A] | D:39 [GLU] | E:31 [A] | ✔ |
D:39 [GLU] | E:33 [G] | D:39 [GLU] | E:33 [G] | ✔ |
D:35 [LYS] | E:24 [G] | D:35 [LYS] | E:24 [G] | ✔ |
D:35 [LYS] | E:25 [A] | D:35 [LYS] | E:25 [A] | ✔ |
D:35 [LYS] | E:31 [A] | D:35 [LYS] | E:31 [A] | ✔ |
D:35 [LYS] | E:33 [G] | D:35 [LYS] | E:33 [G] | ✔ |
D:99 [SER] | E:32 [U] | D:99 [SER] | E:32 [U] | ✔ |
D:60 [PRO] | E:32 [U] | D:60 [PRO] | E:32 [U] | ✔ |
D:59 [ASP] | E:32 [U] | D:59 [ASP] | E:32 [U] | ✔ |
D:58 [VAL] | E:32 [U] | D:58 [VAL] | E:32 [U] | ✔ |
D:34 [ARG] | E:24 [G] | D:34 [ARG] | E:24 [G] | ✔ |
D:97 [ALA] | E:31 [A] | D:97 [ALA] | E:31 [A] | ✔ |
D:97 [ALA] | E:32 [U] | D:97 [ALA] | E:32 [U] | ✔ |
D:98 [ALA] | E:31 [A] | D:98 [ALA] | E:31 [A] | ✔ |
D:98 [ALA] | E:32 [U] | D:98 [ALA] | E:32 [U] | ✔ |
D:96 [ALA] | E:31 [A] | D:96 [ALA] | E:31 [A] | ✔ |
D:96 [ALA] | E:32 [U] | D:96 [ALA] | E:32 [U] | ✔ |
D:84 [LYS] | E:32 [U] | D:84 [LYS] | E:32 [U] | ✔ |
D:36 [GLY] | E:31 [A] | D:36 [GLY] | E:31 [A] | ✔ |
D:36 [GLY] | E:32 [U] | D:36 [GLY] | E:32 [U] | ✔ |
D:36 [GLY] | E:33 [G] | D:36 [GLY] | E:33 [G] | ✔ |
D:95 [VAL] | E:30 [C] | D:95 [VAL] | E:30 [C] | ✔ |
D:95 [VAL] | E:31 [A] | D:95 [VAL] | E:31 [A] | ✔ |
D:42 [LYS] | E:21 [G] | D:42 [LYS] | E:21 [G] | ✔ |
D:42 [LYS] | E:22 [G] | D:42 [LYS] | E:22 [G] | ✔ |
D:38 [ASN] | E:21 [G] | D:38 [ASN] | E:21 [G] | ✔ |
D:38 [ASN] | E:22 [G] | D:38 [ASN] | E:22 [G] | ✔ |
D:38 [ASN] | E:23 [U] | D:38 [ASN] | E:23 [U] | ✔ |
D:38 [ASN] | E:24 [G] | D:38 [ASN] | E:24 [G] | ✔ |
D:38 [ASN] | E:33 [G] | D:38 [ASN] | E:33 [G] | ✔ |
D:46 [ARG] | E:22 [G] | D:46 [ARG] | E:22 [G] | ✔ |
D:46 [ARG] | E:23 [U] | D:46 [ARG] | E:23 [U] | ✔ |
D:93 [ILE] | E:31 [A] | D:93 [ILE] | E:31 [A] | ✔ |
D:57 [ASP] | E:32 [U] | D:57 [ASP] | E:32 [U] | ✔ |
D:37 [THR] | E:31 [A] | D:37 [THR] | E:31 [A] | ✔ |
D:37 [THR] | E:32 [U] | D:37 [THR] | E:32 [U] | ✔ |
D:37 [THR] | E:33 [G] | D:37 [THR] | E:33 [G] | ✔ |
D:63 [ILE] | E:32 [U] | D:63 [ILE] | E:32 [U] | ✔ |
D:34 [ARG] | E:23 [U] | D:34 [ARG] | E:23 [U] | ❌ 3HAX_D_E |
D:46 [ARG] | E:21 [G] | D:46 [ARG] | E:21 [G] | ❌ 2HVY_D_E |
D:40 [THR] | E:33 [G] | D:40 [THR] | E:33 [G] | ❌ 2HVY_D:40 no longer at interface |
D:45 [GLU] | E:22 [G] | D:45 [GLU] | E:22 [G] | ❌ 2HVY_D:45 no longer at interface |
D:94 [GLU] | E:30 [C] | D:94 [GLU] | E:30 [C] | ❌ 2HVY_D:94 no longer at interface |
Properties of this pair
Common ECOD label(s) |
Common RFAM label(s) |
Interface TM-score |
Interface RMSD |
Percentage identity |
Protein TM-score |
RNA TM-score |
Protein coverage |
RNA coverage |
Percentage conservation |
Apolar conservation |
H-bond conservation |
Percentage switching out |
---|---|---|---|---|---|---|---|---|---|---|---|---|
L30e-like | 0.93 | 0.24 | 1.00 | 1.0 | 0.65 | 1.0 | 1.0 | 0.98 | 0.96 | 0.88 | 0.60 |
Other pairs involving 2HVY_D_E or 3HAX_D_E
Total number of entries: 26