Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
StructureStructure (with hetatm)
Chain
Chainbow
View
Focus on
InterfaceRNA
Protein
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Show chains
Interface
show interface as licoriceCommon contacts -
2HVY_D
|
2HVY_E
|
7O7Y_Bc
|
7O7Y_B5
|
Conserved?
|
---|---|---|---|---|
D:39 [GLU] | E:24 [G] | Bc:33 [GLN] | B5:2501 [G] | ✔ |
D:39 [GLU] | E:31 [A] | Bc:33 [GLN] | B5:2516 [G] | ✔ |
D:39 [GLU] | E:33 [G] | Bc:33 [GLN] | B5:2518 [G] | ✔ |
D:35 [LYS] | E:31 [A] | Bc:29 [LEU] | B5:2516 [G] | ✔ |
D:35 [LYS] | E:33 [G] | Bc:29 [LEU] | B5:2518 [G] | ✔ |
D:99 [SER] | E:32 [U] | Bc:93 [THR] | B5:2517 [A] | ✔ |
D:60 [PRO] | E:32 [U] | Bc:53 [PRO] | B5:2517 [A] | ✔ |
D:58 [VAL] | E:32 [U] | Bc:52 [CYS] | B5:2517 [A] | ✔ |
D:97 [ALA] | E:31 [A] | Bc:91 [VAL] | B5:2516 [G] | ✔ |
D:97 [ALA] | E:32 [U] | Bc:91 [VAL] | B5:2517 [A] | ✔ |
D:98 [ALA] | E:31 [A] | Bc:92 [CYS] | B5:2516 [G] | ✔ |
D:98 [ALA] | E:32 [U] | Bc:92 [CYS] | B5:2517 [A] | ✔ |
D:96 [ALA] | E:31 [A] | Bc:90 [ARG] | B5:2516 [G] | ✔ |
D:96 [ALA] | E:32 [U] | Bc:90 [ARG] | B5:2517 [A] | ✔ |
D:84 [LYS] | E:32 [U] | Bc:78 [ASN] | B5:2517 [A] | ✔ |
D:36 [GLY] | E:31 [A] | Bc:30 [GLY] | B5:2516 [G] | ✔ |
D:36 [GLY] | E:32 [U] | Bc:30 [GLY] | B5:2517 [A] | ✔ |
D:36 [GLY] | E:33 [G] | Bc:30 [GLY] | B5:2518 [G] | ✔ |
D:95 [VAL] | E:31 [A] | Bc:89 [TYR] | B5:2516 [G] | ✔ |
D:42 [LYS] | E:22 [G] | Bc:36 [LYS] | B5:2499 [U] | ✔ |
D:38 [ASN] | E:22 [G] | Bc:32 [LYS] | B5:2499 [U] | ✔ |
D:38 [ASN] | E:23 [U] | Bc:32 [LYS] | B5:2500 [G] | ✔ |
D:38 [ASN] | E:24 [G] | Bc:32 [LYS] | B5:2501 [G] | ✔ |
D:38 [ASN] | E:33 [G] | Bc:32 [LYS] | B5:2518 [G] | ✔ |
D:57 [ASP] | E:32 [U] | Bc:51 [ASN] | B5:2517 [A] | ✔ |
D:37 [THR] | E:31 [A] | Bc:31 [TYR] | B5:2516 [G] | ✔ |
D:37 [THR] | E:32 [U] | Bc:31 [TYR] | B5:2517 [A] | ✔ |
D:37 [THR] | E:33 [G] | Bc:31 [TYR] | B5:2518 [G] | ✔ |
D:63 [ILE] | E:32 [U] | Bc:56 [ARG] | B5:2517 [A] | ✔ |
D:35 [LYS] | E:24 [G] | Bc:29 [LEU] | B5:2501 [G] | ❌ 7O7Y_Bc_B5 |
D:95 [VAL] | E:30 [C] | Bc:89 [TYR] | B5:2515 [C] | ❌ 7O7Y_Bc_B5 |
D:42 [LYS] | E:23 [U] | Bc:36 [LYS] | B5:2500 [G] | ❌ 2HVY_D_E |
D:96 [ALA] | E:30 [C] | Bc:90 [ARG] | B5:2515 [C] | ❌ 2HVY_D_E |
D:35 [LYS] | E:25 [A] | Bc:29 [LEU] | B5:2502 [A] | ❌ 7O7Y_B5:2502 no longer at interface |
D:34 [ARG] | E:23 [U] | Bc:28 [VAL] | B5:2500 [G] | ❌ 7O7Y_Bc:28 no longer at interface |
D:34 [ARG] | E:24 [G] | Bc:28 [VAL] | B5:2501 [G] | ❌ 7O7Y_Bc:28 no longer at interface |
D:46 [ARG] | E:22 [G] | Bc:40 [GLN] | B5:2499 [U] | ❌ 7O7Y_Bc:40 no longer at interface |
D:46 [ARG] | E:23 [U] | Bc:40 [GLN] | B5:2500 [G] | ❌ 7O7Y_Bc:40 no longer at interface |
D:93 [ILE] | E:31 [A] | Bc:87 [LYS] | B5:2516 [G] | ❌ 7O7Y_Bc:87 no longer at interface |
D:40 [THR] | E:33 [G] | Bc:34 [SER] | B5:2518 [G] | ❌ 2HVY_D:40 no longer at interface |
Properties of this pair
Common ECOD label(s) |
Common RFAM label(s) |
Interface TM-score |
Interface RMSD |
Percentage identity |
Protein TM-score |
RNA TM-score |
Protein coverage |
RNA coverage |
Percentage conservation |
Apolar conservation |
H-bond conservation |
Percentage switching out |
---|---|---|---|---|---|---|---|---|---|---|---|---|
L30e-like | 0.65 | 1.7 | 0.15 | 0.81 | 0.31 | 0.8 | 0.78 | 0.79 | 0.70 | 0.39 | 0.64 |
Other pairs involving 2HVY_D_E or 7O7Y_Bc_B5
Total number of entries: 21