Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
StructureStructure (with hetatm)
Chain
Chainbow
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Focus on
InterfaceRNA
Protein
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Show chains
Interface
show interface as licoriceCommon contacts -
2HVY_D
|
2HVY_E
|
7OZQ_A
|
7OZQ_H
|
Conserved?
|
---|---|---|---|---|
D:39 [GLU] | E:24 [G] | A:38 [GLU] | H:5 [U] | ✔ |
D:39 [GLU] | E:31 [A] | A:38 [GLU] | H:28 [A] | ✔ |
D:39 [GLU] | E:33 [G] | A:38 [GLU] | H:30 [G] | ✔ |
D:35 [LYS] | E:31 [A] | A:34 [LYS] | H:28 [A] | ✔ |
D:35 [LYS] | E:33 [G] | A:34 [LYS] | H:30 [G] | ✔ |
D:99 [SER] | E:32 [U] | A:98 [SER] | H:29 [U] | ✔ |
D:60 [PRO] | E:32 [U] | A:59 [PRO] | H:29 [U] | ✔ |
D:59 [ASP] | E:32 [U] | A:58 [ASP] | H:29 [U] | ✔ |
D:58 [VAL] | E:32 [U] | A:57 [VAL] | H:29 [U] | ✔ |
D:34 [ARG] | E:23 [U] | A:33 [ARG] | H:4 [C] | ✔ |
D:34 [ARG] | E:24 [G] | A:33 [ARG] | H:5 [U] | ✔ |
D:97 [ALA] | E:31 [A] | A:96 [ALA] | H:28 [A] | ✔ |
D:97 [ALA] | E:32 [U] | A:96 [ALA] | H:29 [U] | ✔ |
D:98 [ALA] | E:31 [A] | A:97 [ALA] | H:28 [A] | ✔ |
D:98 [ALA] | E:32 [U] | A:97 [ALA] | H:29 [U] | ✔ |
D:96 [ALA] | E:31 [A] | A:95 [ALA] | H:28 [A] | ✔ |
D:96 [ALA] | E:32 [U] | A:95 [ALA] | H:29 [U] | ✔ |
D:84 [LYS] | E:32 [U] | A:83 [LYS] | H:29 [U] | ✔ |
D:36 [GLY] | E:31 [A] | A:35 [GLY] | H:28 [A] | ✔ |
D:36 [GLY] | E:32 [U] | A:35 [GLY] | H:29 [U] | ✔ |
D:36 [GLY] | E:33 [G] | A:35 [GLY] | H:30 [G] | ✔ |
D:95 [VAL] | E:30 [C] | A:94 [VAL] | H:27 [G] | ✔ |
D:95 [VAL] | E:31 [A] | A:94 [VAL] | H:28 [A] | ✔ |
D:42 [LYS] | E:22 [G] | A:41 [LYS] | H:3 [A] | ✔ |
D:38 [ASN] | E:33 [G] | A:37 [ASN] | H:30 [G] | ✔ |
D:46 [ARG] | E:22 [G] | A:45 [ARG] | H:3 [A] | ✔ |
D:46 [ARG] | E:23 [U] | A:45 [ARG] | H:4 [C] | ✔ |
D:93 [ILE] | E:31 [A] | A:92 [ILE] | H:28 [A] | ✔ |
D:57 [ASP] | E:32 [U] | A:56 [ASP] | H:29 [U] | ✔ |
D:37 [THR] | E:31 [A] | A:36 [THR] | H:28 [A] | ✔ |
D:37 [THR] | E:32 [U] | A:36 [THR] | H:29 [U] | ✔ |
D:37 [THR] | E:33 [G] | A:36 [THR] | H:30 [G] | ✔ |
D:63 [ILE] | E:32 [U] | A:62 [ILE] | H:29 [U] | ✔ |
D:35 [LYS] | E:24 [G] | A:34 [LYS] | H:5 [U] | ❌ 7OZQ_A_H |
D:38 [ASN] | E:22 [G] | A:37 [ASN] | H:3 [A] | ❌ 7OZQ_A_H |
D:38 [ASN] | E:23 [U] | A:37 [ASN] | H:4 [C] | ❌ 7OZQ_A_H |
D:38 [ASN] | E:24 [G] | A:37 [ASN] | H:5 [U] | ❌ 7OZQ_A_H |
D:38 [ASN] | E:32 [U] | A:37 [ASN] | H:29 [U] | ❌ 2HVY_D_E |
D:42 [LYS] | E:23 [U] | A:41 [LYS] | H:4 [C] | ❌ 2HVY_D_E |
D:35 [LYS] | E:25 [A] | A:34 [LYS] | H:6 [A] | ❌ 7OZQ_H:6 no longer at interface |
D:42 [LYS] | E:21 [G] | A:41 [LYS] | H:2 [U] | ❌ 7OZQ_H:2 no longer at interface |
D:38 [ASN] | E:21 [G] | A:37 [ASN] | H:2 [U] | ❌ 7OZQ_H:2 no longer at interface |
D:94 [GLU] | E:26 [G] | A:93 [GLU] | H:7 [G] | ❌ 2HVY_D:94, 2HVY_E:26 no longer at interface |
D:40 [THR] | E:33 [G] | A:39 [THR] | H:30 [G] | ❌ 2HVY_D:40 no longer at interface |
D:94 [GLU] | E:30 [C] | A:93 [GLU] | H:27 [G] | ❌ 2HVY_D:94 no longer at interface |
Properties of this pair
Common ECOD label(s) |
Common RFAM label(s) |
Interface TM-score |
Interface RMSD |
Percentage identity |
Protein TM-score |
RNA TM-score |
Protein coverage |
RNA coverage |
Percentage conservation |
Apolar conservation |
H-bond conservation |
Percentage switching out |
---|---|---|---|---|---|---|---|---|---|---|---|---|
L30e-like | 0.85 | 0.26 | 0.38 | 0.99 | 0.4 | 1.0 | 0.88 | 0.83 | 0.81 | 0.59 | 0.50 |
Other pairs involving 2HVY_D_E or 7OZQ_A_H
Total number of entries: 26