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All interfaces > All interologs > Interface groups > group139 > 3HAX_D_E

Interface analysis

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

3HAX_D
3HAX_E
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
D:34 [ARG] E:24 [G] 3.17 E:34 [A] 46.81
D:35 [LYS] E:24 [G] 3.18 E:34 [A] sugar:SC 67.6
D:35 [LYS] E:25 [A] 2.68 E:33 [G] 67.6
D:35 [LYS] E:31 [A] 2.85 base:SC 67.6
D:35 [LYS] E:33 [G] 3.45 E:25 [A] base:BB 67.6
D:36 [GLY] E:31 [A] 3.66 99.0
D:36 [GLY] E:32 [U] 3.53 99.0
D:36 [GLY] E:33 [G] 3.14 E:25 [A] 99.0
D:37 [THR] E:31 [A] 4.25 44.63
D:37 [THR] E:32 [U] 2.78 44.63
D:37 [THR] E:33 [G] 3.46 E:25 [A] 44.63
D:38 [ASN] E:21 [G] 4.48 E:37 [C] 81.1
D:38 [ASN] E:22 [G] 4.86 E:36 [C] 81.1
D:38 [ASN] E:23 [U] 4.79 E:35 [U] 81.1
D:38 [ASN] E:24 [G] 2.61 E:34 [A] base:SC 81.1
D:38 [ASN] E:33 [G] 3.1 E:25 [A] base:BB 81.1
D:39 [GLU] E:24 [G] 2.41 E:34 [A] sugar:SC 77.32
D:39 [GLU] E:31 [A] 4.14 77.32
D:39 [GLU] E:33 [G] 2.68 E:25 [A] base:BB, base:SC, base:SC 77.32
D:40 [THR] E:33 [G] 4.93 E:25 [A] 76.73
D:42 [LYS] E:21 [G] 2.69 E:37 [C] 78.44
D:42 [LYS] E:22 [G] 3.09 E:36 [C] 78.44
D:45 [GLU] E:22 [G] 4.28 E:36 [C] 45.54
D:46 [ARG] E:21 [G] 4.97 E:37 [C] 53.39
D:46 [ARG] E:22 [G] 2.73 E:36 [C] 53.39
D:46 [ARG] E:23 [U] 2.81 E:35 [U] 53.39
D:57 [ASP] E:32 [U] 3.96 97.86
D:58 [VAL] E:32 [U] 3.45 78.5
D:59 [ASP] E:32 [U] 2.71 base:BB, base:BB 67.83
D:60 [PRO] E:32 [U] 4.0 74.59
D:63 [ILE] E:32 [U] 3.53 64.69
D:84 [LYS] E:32 [U] 3.38 80.07
D:93 [ILE] E:31 [A] 3.5 74.52
D:94 [GLU] E:30 [C] 3.53 65.07
D:95 [VAL] E:30 [C] 3.53 67.99
D:95 [VAL] E:31 [A] 3.45 67.99
D:96 [ALA] E:31 [A] 3.01 sugar:BB 39.71
D:96 [ALA] E:32 [U] 3.73 39.71
D:97 [ALA] E:31 [A] 3.39 86.3
D:97 [ALA] E:32 [U] 3.51 86.3
D:98 [ALA] E:31 [A] 4.66 78.62
D:98 [ALA] E:32 [U] 2.8 78.62
D:99 [SER] E:32 [U] 4.47 64.42

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group139 3HAX_D_E D: 50s ribosomal protein l7ae, Pyrococcus furiosus (genetically engineered) E: H/aca RNA Q8U160 L30e-like ✔

Interologs

Total number of interologs for this interface: 13

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1JJ2_F_0 3HAX_D_E 0.97 0.8 0.65 0.56 L30e-like compare
1YHQ_F_0 3HAX_D_E 0.97 0.8 0.77 0.56 L30e-like compare
1VQ8_F_0 3HAX_D_E 0.99 0.79 0.77 0.56 L30e-like compare
2HVY_D_E 3HAX_D_E 0.98 0.93 0.24 1.0 L30e-like compare
3HAX_D_E 6AZ3_d_3 0.68 0.59 1.59 0.17 L30e-like compare
3HAX_D_E 3LWR_C_D 0.90 0.97 0.42 0.89 L30e-like compare
3HAX_D_E 6Q8U_C_A,B 0.89 0.84 0.42 0.56 L30e-like compare
3HAX_D_E 7O7Y_Bc_B5 0.76 0.63 1.73 0.13 L30e-like compare
3HAX_D_E 7O7Y_BG_B5,B8 0.54 0.76 1.46 0.39 L30e-like compare
3HAX_D_E 6AZ3_G_1,7 0.66 0.74 1.4 0.26 L30e-like compare
3HAX_D_E 7OZQ_A_H 0.89 0.86 0.25 0.38 L30e-like compare
3HAX_D_E 4BW0_B_A 0.89 0.91 0.43 0.56 L30e-like compare
3HAX_D_E 7O7Y_Al_A2 0.97 0.6 1.46 0.24 L30e-like compare