Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
StructureStructure (with hetatm)
Chain
Chainbow
View
Focus on
InterfaceRNA
Protein
All
Show chains
Interface
show interface as licoriceCommon contacts -
3HAX_D
|
3HAX_E
|
6AZ3_d
|
6AZ3_3
|
Conserved?
|
---|---|---|---|---|
D:39 [GLU] | E:24 [G] | d:31 [GLN] | 3:106 [U] | ✔ |
D:39 [GLU] | E:31 [A] | d:31 [GLN] | 3:125 [G] | ✔ |
D:39 [GLU] | E:33 [G] | d:31 [GLN] | 3:127 [G] | ✔ |
D:35 [LYS] | E:31 [A] | d:27 [LEU] | 3:125 [G] | ✔ |
D:35 [LYS] | E:33 [G] | d:27 [LEU] | 3:127 [G] | ✔ |
D:99 [SER] | E:32 [U] | d:91 [VAL] | 3:126 [A] | ✔ |
D:60 [PRO] | E:32 [U] | d:51 [PRO] | 3:126 [A] | ✔ |
D:58 [VAL] | E:32 [U] | d:50 [CYS] | 3:126 [A] | ✔ |
D:40 [THR] | E:33 [G] | d:32 [ALA] | 3:127 [G] | ✔ |
D:97 [ALA] | E:31 [A] | d:89 [THR] | 3:125 [G] | ✔ |
D:97 [ALA] | E:32 [U] | d:89 [THR] | 3:126 [A] | ✔ |
D:98 [ALA] | E:31 [A] | d:90 [CYS] | 3:125 [G] | ✔ |
D:98 [ALA] | E:32 [U] | d:90 [CYS] | 3:126 [A] | ✔ |
D:96 [ALA] | E:31 [A] | d:88 [ARG] | 3:125 [G] | ✔ |
D:96 [ALA] | E:32 [U] | d:88 [ARG] | 3:126 [A] | ✔ |
D:84 [LYS] | E:32 [U] | d:76 [ASN] | 3:126 [A] | ✔ |
D:36 [GLY] | E:31 [A] | d:28 [GLY] | 3:125 [G] | ✔ |
D:36 [GLY] | E:32 [U] | d:28 [GLY] | 3:126 [A] | ✔ |
D:36 [GLY] | E:33 [G] | d:28 [GLY] | 3:127 [G] | ✔ |
D:95 [VAL] | E:31 [A] | d:87 [PHE] | 3:125 [G] | ✔ |
D:38 [ASN] | E:33 [G] | d:30 [GLN] | 3:127 [G] | ✔ |
D:57 [ASP] | E:32 [U] | d:49 [ASN] | 3:126 [A] | ✔ |
D:37 [THR] | E:31 [A] | d:29 [THR] | 3:125 [G] | ✔ |
D:37 [THR] | E:32 [U] | d:29 [THR] | 3:126 [A] | ✔ |
D:37 [THR] | E:33 [G] | d:29 [THR] | 3:127 [G] | ✔ |
D:63 [ILE] | E:32 [U] | d:54 [ARG] | 3:126 [A] | ✔ |
D:35 [LYS] | E:24 [G] | d:27 [LEU] | 3:106 [U] | ❌ 6AZ3_d_3 |
D:94 [GLU] | E:30 [C] | d:86 [HIS] | 3:124 [G] | ❌ 6AZ3_d_3 |
D:95 [VAL] | E:30 [C] | d:87 [PHE] | 3:124 [G] | ❌ 6AZ3_d_3 |
D:38 [ASN] | E:24 [G] | d:30 [GLN] | 3:106 [U] | ❌ 6AZ3_d_3 |
D:93 [ILE] | E:31 [A] | d:85 [LYS] | 3:125 [G] | ❌ 6AZ3_d_3 |
D:96 [ALA] | E:30 [C] | d:88 [ARG] | 3:124 [G] | ❌ 3HAX_D_E |
D:35 [LYS] | E:25 [A] | d:27 [LEU] | 3:108 [A] | ❌ 6AZ3_3:108 no longer at interface |
D:42 [LYS] | E:21 [G] | d:34 [THR] | 3:103 [U] | ❌ 6AZ3_d:34, 6AZ3_3:103 no longer at interface |
D:42 [LYS] | E:22 [G] | d:34 [THR] | 3:104 [U] | ❌ 6AZ3_d:34, 6AZ3_3:104 no longer at interface |
D:38 [ASN] | E:21 [G] | d:30 [GLN] | 3:103 [U] | ❌ 6AZ3_3:103 no longer at interface |
D:38 [ASN] | E:22 [G] | d:30 [GLN] | 3:104 [U] | ❌ 6AZ3_3:104 no longer at interface |
D:38 [ASN] | E:23 [U] | d:30 [GLN] | 3:105 [U] | ❌ 6AZ3_3:105 no longer at interface |
D:46 [ARG] | E:21 [G] | d:38 [GLN] | 3:103 [U] | ❌ 6AZ3_d:38, 6AZ3_3:103 no longer at interface |
D:46 [ARG] | E:22 [G] | d:38 [GLN] | 3:104 [U] | ❌ 6AZ3_d:38, 6AZ3_3:104 no longer at interface |
D:46 [ARG] | E:23 [U] | d:38 [GLN] | 3:105 [U] | ❌ 6AZ3_d:38, 6AZ3_3:105 no longer at interface |
D:45 [GLU] | E:22 [G] | d:37 [ARG] | 3:104 [U] | ❌ 6AZ3_d:37, 6AZ3_3:104 no longer at interface |
D:34 [ARG] | E:24 [G] | d:26 [VAL] | 3:106 [U] | ❌ 6AZ3_d:26 no longer at interface |
Properties of this pair
Common ECOD label(s) |
Common RFAM label(s) |
Interface TM-score |
Interface RMSD |
Percentage identity |
Protein TM-score |
RNA TM-score |
Protein coverage |
RNA coverage |
Percentage conservation |
Apolar conservation |
H-bond conservation |
Percentage switching out |
---|---|---|---|---|---|---|---|---|---|---|---|---|
L30e-like | 0.59 | 1.59 | 0.17 | 0.86 | 0.22 | 1.0 | 0.83 | 0.68 | 0.60 | 0.26 | 0.65 |
Other pairs involving 3HAX_D_E or 6AZ3_d_3
Total number of entries: 20