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All interfaces > All interologs > Interface groups > group139 > 3LWR_C_D

Interface analysis

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Protein

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Interface

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Rim - Core

Contacts -

3LWR_C
3LWR_D
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
C:34 [ARG] D:24 [G] 2.94 D:32 [A] 47.93
C:35 [LYS] D:24 [G] 3.14 D:32 [A] sugar:SC 70.17
C:35 [LYS] D:25 [A] 2.58 D:31 [G] 70.17
C:35 [LYS] D:29 [A] 2.8 base:SC 70.17
C:35 [LYS] D:31 [G] 3.54 D:25 [A] base:BB 70.17
C:36 [GLY] D:29 [A] 3.68 98.93
C:36 [GLY] D:30 [U] 3.63 98.93
C:36 [GLY] D:31 [G] 3.12 D:25 [A] 98.93
C:37 [THR] D:29 [A] 4.22 40.14
C:37 [THR] D:30 [U] 2.78 40.14
C:37 [THR] D:31 [G] 3.45 D:25 [A] 40.14
C:38 [ASN] D:21 [G] 4.56 D:35 [C] 73.9
C:38 [ASN] D:22 [G] 4.67 D:34 [C] 73.9
C:38 [ASN] D:24 [G] 2.68 D:32 [A] base:SC 73.9
C:38 [ASN] D:30 [U] 4.96 73.9
C:38 [ASN] D:31 [G] 2.91 D:25 [A] base:BB 73.9
C:39 [GLU] D:24 [G] 2.83 D:32 [A] sugar:SC base/AA stacks 65.62
C:39 [GLU] D:29 [A] 4.3 65.62
C:39 [GLU] D:31 [G] 2.93 D:25 [A] base:BB, base:SC, base:SC 65.62
C:40 [THR] D:31 [G] 4.93 D:25 [A] 80.38
C:42 [LYS] D:21 [G] 3.87 D:35 [C] 75.43
C:42 [LYS] D:22 [G] 3.1 D:34 [C] 75.43
C:46 [ARG] D:22 [G] 2.87 D:34 [C] 46.66
C:46 [ARG] D:23 [U] 3.14 D:33 [G] 46.66
C:57 [ASP] D:30 [U] 4.06 98.35
C:58 [VAL] D:30 [U] 3.54 74.57
C:59 [ASP] D:30 [U] 2.94 base:BB, base:BB 69.34
C:60 [PRO] D:30 [U] 3.91 71.88
C:63 [ILE] D:30 [U] 3.72 64.27
C:84 [LYS] D:30 [U] 3.46 79.87
C:85 [LYS] D:27 [C] 4.86 0.15
C:93 [ILE] D:29 [A] 3.73 72.69
C:94 [GLU] D:27 [C] 2.77 base:SC 47.0
C:95 [VAL] D:27 [C] 4.03 67.81
C:95 [VAL] D:28 [A] 3.83 67.81
C:95 [VAL] D:29 [A] 2.98 67.81
C:96 [ALA] D:29 [A] 2.87 sugar:BB 33.41
C:96 [ALA] D:30 [U] 3.82 33.41
C:97 [ALA] D:29 [A] 3.46 80.88
C:97 [ALA] D:30 [U] 3.57 80.88
C:98 [ALA] D:29 [A] 4.68 76.63
C:98 [ALA] D:30 [U] 2.83 76.63
C:99 [SER] D:30 [U] 4.62 64.97

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group139 3LWR_C_D C: 50s ribosomal protein l7ae, Pyrococcus furiosus (genetically engineered) D: H/aca RNA Q8U160 L30e-like Pab160 RNA ✔

Interologs

Total number of interologs for this interface: 14

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1JJ2_F_0 3LWR_C_D 0.88 0.8 0.7 0.6 L30e-like compare
3LWR_C_D 6Q8U_C_A,B 0.79 0.83 0.49 0.56 L30e-like compare
3LWR_C_D 6AZ3_G_1,7 0.66 0.73 1.54 0.26 L30e-like compare
3LWR_C_D 7O7Y_Bc_B5 0.79 0.64 1.75 0.13 L30e-like compare
3LWR_C_D 7OZQ_A_H 0.78 0.84 0.32 0.38 L30e-like compare
3LWR_C_D 7O7Y_Al_A2 0.88 0.6 1.41 0.2 L30e-like compare
3LWR_C_D 4BW0_B_A 0.78 0.89 0.54 0.56 L30e-like compare
3LWR_C_D 5XTM_A_B 0.83 0.76 0.5 0.22 L30e-like compare
3LWR_C_D 6AZ3_d_3 0.69 0.6 1.53 0.17 L30e-like compare
3LWR_C_D 7O7Y_BG_B5,B8 0.53 0.74 1.47 0.35 L30e-like compare
1YHQ_F_0 3LWR_C_D 0.94 0.8 0.53 0.67 L30e-like compare
1VQ8_F_0 3LWR_C_D 0.87 0.81 0.55 0.6 L30e-like compare
2HVY_D_E 3LWR_C_D 0.91 0.92 0.54 0.89 L30e-like compare
3HAX_D_E 3LWR_C_D 0.90 0.97 0.42 0.89 L30e-like compare