RNAprotDB

All interfaces > All interologs > Interface groups > group139 > 4BW0_B_A

Interface analysis

mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show as licorice
show Accessibility
Rim - Core

Contacts -

4BW0_B
4BW0_A
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
B:29 [LYS] A:5 [G] 3.83 A:21 [A] 42.87
B:30 [LYS] A:6 [A] 4.4 A:20 [G] 77.74
B:30 [LYS] A:18 [A] 3.19 77.74
B:30 [LYS] A:20 [G] 3.41 A:6 [A] base:BB 77.74
B:31 [GLY] A:18 [A] 3.67 98.95
B:31 [GLY] A:19 [A] 3.74 98.95
B:31 [GLY] A:20 [G] 3.12 A:6 [A] 98.95
B:32 [THR] A:18 [A] 4.42 42.92
B:32 [THR] A:19 [A] 2.82 42.92
B:32 [THR] A:20 [G] 3.51 A:6 [A] 42.92
B:33 [ASN] A:4 [G] 4.49 A:22 [A] 73.0
B:33 [ASN] A:5 [G] 2.58 A:21 [A] base:SC 73.0
B:33 [ASN] A:19 [A] 4.89 73.0
B:33 [ASN] A:20 [G] 3.16 A:6 [A] base:BB 73.0
B:34 [GLU] A:5 [G] 2.12 A:21 [A] sugar:SC 67.51
B:34 [GLU] A:6 [A] 4.78 A:20 [G] 67.51
B:34 [GLU] A:18 [A] 4.32 67.51
B:34 [GLU] A:20 [G] 2.93 A:6 [A] base:BB, base:SC, base:SC 67.51
B:35 [THR] A:20 [G] 4.84 A:6 [A] 80.91
B:37 [LYS] A:3 [G] 2.69 A:23 [C] 80.48
B:37 [LYS] A:4 [G] 4.27 A:22 [A] 80.48
B:41 [ARG] A:3 [G] 3.58 A:23 [C] 58.74
B:41 [ARG] A:4 [G] 2.93 A:22 [A] 58.74
B:54 [ASP] A:19 [A] 3.13 71.27
B:55 [PRO] A:19 [A] 3.77 74.26
B:58 [ILE] A:19 [A] 3.45 66.1
B:79 [LYS] A:19 [A] 3.27 81.73
B:88 [ILE] A:18 [A] 3.6 80.37
B:89 [GLU] A:7 [G] 4.28 A:16 [C] 59.0
B:89 [GLU] A:17 [G] 2.85 base:SC 59.0
B:90 [VAL] A:17 [G] 3.66 74.88
B:90 [VAL] A:18 [A] 3.31 74.88
B:91 [PRO] A:18 [A] 3.46 sugar:BB 29.78
B:91 [PRO] A:19 [A] 3.86 29.78
B:92 [CYS] A:18 [A] 3.45 75.13
B:92 [CYS] A:19 [A] 3.29 75.13
B:93 [ALA] A:18 [A] 4.41 77.24
B:93 [ALA] A:19 [A] 2.69 77.24
B:94 [SER] A:19 [A] 4.71 72.09

logo_download Export the table of contacts

*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group139 4BW0_B_A B: 50s ribosomal protein l7ae, Archaeoglobus fulgidus (genetically engineered) A: Hmkt-7, Haloarcula marismortui (synthetic) O29494 L30e-like ✔

Interologs

Total number of interologs for this interface: 14

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1JJ2_F_0 4BW0_B_A 0.89 0.94 0.48 0.44 L30e-like compare
3LWR_C_D 4BW0_B_A 0.78 0.89 0.54 0.56 L30e-like compare
1YHQ_F_0 4BW0_B_A 0.88 0.94 0.45 0.44 L30e-like compare
4BW0_B_A 7OZQ_A_H 0.91 0.9 0.62 0.5 L30e-like compare
4BW0_B_A 5XTM_A_B 0.94 0.87 0.57 0.22 L30e-like compare
4BW0_B_A 7O7Y_Al_A2 0.85 0.75 1.35 0.22 L30e-like compare
4BW0_B_A 7O7Y_BG_B5,B8 0.56 0.87 1.17 0.3 L30e-like compare
4BW0_B_A 6AZ3_G_1,7 0.69 0.85 1.34 0.2 L30e-like compare
4BW0_B_A 7O7Y_Bc_B5 0.76 0.74 1.81 0.15 L30e-like compare
4BW0_B_A 6Q8U_C_A,B 0.99 0.95 0.45 1.0 L30e-like compare
4BW0_B_A 6AZ3_d_3 0.70 0.69 1.54 0.11 L30e-like compare
1VQ8_F_0 4BW0_B_A 0.88 0.94 0.47 0.44 L30e-like compare
2HVY_D_E 4BW0_B_A 0.83 0.91 0.45 0.56 L30e-like compare
3HAX_D_E 4BW0_B_A 0.89 0.91 0.43 0.56 L30e-like compare