Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
StructureStructure (with hetatm)
Chain
Chainbow
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InterfaceRNA
Protein
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Show chains
Interface
show interface as licoriceCommon contacts -
4BW0_B
|
4BW0_A
|
7O7Y_Bc
|
7O7Y_B5
|
Conserved?
|
---|---|---|---|---|
B:55 [PRO] | A:19 [A] | Bc:53 [PRO] | B5:2517 [A] | ✔ |
B:37 [LYS] | A:3 [G] | Bc:36 [LYS] | B5:2499 [U] | ✔ |
B:37 [LYS] | A:4 [G] | Bc:36 [LYS] | B5:2500 [G] | ✔ |
B:91 [PRO] | A:18 [A] | Bc:90 [ARG] | B5:2516 [G] | ✔ |
B:91 [PRO] | A:19 [A] | Bc:90 [ARG] | B5:2517 [A] | ✔ |
B:79 [LYS] | A:19 [A] | Bc:78 [ASN] | B5:2517 [A] | ✔ |
B:34 [GLU] | A:5 [G] | Bc:33 [GLN] | B5:2501 [G] | ✔ |
B:34 [GLU] | A:18 [A] | Bc:33 [GLN] | B5:2516 [G] | ✔ |
B:34 [GLU] | A:20 [G] | Bc:33 [GLN] | B5:2518 [G] | ✔ |
B:94 [SER] | A:19 [A] | Bc:93 [THR] | B5:2517 [A] | ✔ |
B:32 [THR] | A:18 [A] | Bc:31 [TYR] | B5:2516 [G] | ✔ |
B:32 [THR] | A:19 [A] | Bc:31 [TYR] | B5:2517 [A] | ✔ |
B:32 [THR] | A:20 [G] | Bc:31 [TYR] | B5:2518 [G] | ✔ |
B:58 [ILE] | A:19 [A] | Bc:56 [ARG] | B5:2517 [A] | ✔ |
B:35 [THR] | A:20 [G] | Bc:34 [SER] | B5:2518 [G] | ✔ |
B:31 [GLY] | A:18 [A] | Bc:30 [GLY] | B5:2516 [G] | ✔ |
B:31 [GLY] | A:19 [A] | Bc:30 [GLY] | B5:2517 [A] | ✔ |
B:31 [GLY] | A:20 [G] | Bc:30 [GLY] | B5:2518 [G] | ✔ |
B:30 [LYS] | A:18 [A] | Bc:29 [LEU] | B5:2516 [G] | ✔ |
B:30 [LYS] | A:20 [G] | Bc:29 [LEU] | B5:2518 [G] | ✔ |
B:92 [CYS] | A:18 [A] | Bc:91 [VAL] | B5:2516 [G] | ✔ |
B:92 [CYS] | A:19 [A] | Bc:91 [VAL] | B5:2517 [A] | ✔ |
B:33 [ASN] | A:4 [G] | Bc:32 [LYS] | B5:2500 [G] | ✔ |
B:33 [ASN] | A:5 [G] | Bc:32 [LYS] | B5:2501 [G] | ✔ |
B:33 [ASN] | A:20 [G] | Bc:32 [LYS] | B5:2518 [G] | ✔ |
B:93 [ALA] | A:18 [A] | Bc:92 [CYS] | B5:2516 [G] | ✔ |
B:93 [ALA] | A:19 [A] | Bc:92 [CYS] | B5:2517 [A] | ✔ |
B:90 [VAL] | A:18 [A] | Bc:89 [TYR] | B5:2516 [G] | ✔ |
B:89 [GLU] | A:17 [G] | Bc:88 [TYR] | B5:2515 [C] | ❌ 7O7Y_Bc_B5 |
B:33 [ASN] | A:19 [A] | Bc:32 [LYS] | B5:2517 [A] | ❌ 7O7Y_Bc_B5 |
B:90 [VAL] | A:17 [G] | Bc:89 [TYR] | B5:2515 [C] | ❌ 7O7Y_Bc_B5 |
B:33 [ASN] | A:3 [G] | Bc:32 [LYS] | B5:2499 [U] | ❌ 4BW0_B_A |
B:91 [PRO] | A:17 [G] | Bc:90 [ARG] | B5:2515 [C] | ❌ 4BW0_B_A |
B:89 [GLU] | A:7 [G] | Bc:88 [TYR] | B5:2506 [G] | ❌ 7O7Y_B5:2506 no longer at interface |
B:34 [GLU] | A:6 [A] | Bc:33 [GLN] | B5:2502 [A] | ❌ 7O7Y_B5:2502 no longer at interface |
B:30 [LYS] | A:6 [A] | Bc:29 [LEU] | B5:2502 [A] | ❌ 7O7Y_B5:2502 no longer at interface |
B:88 [ILE] | A:18 [A] | Bc:87 [LYS] | B5:2516 [G] | ❌ 7O7Y_Bc:87 no longer at interface |
B:41 [ARG] | A:3 [G] | Bc:40 [GLN] | B5:2499 [U] | ❌ 7O7Y_Bc:40 no longer at interface |
B:41 [ARG] | A:4 [G] | Bc:40 [GLN] | B5:2500 [G] | ❌ 7O7Y_Bc:40 no longer at interface |
B:29 [LYS] | A:5 [G] | Bc:28 [VAL] | B5:2501 [G] | ❌ 7O7Y_Bc:28 no longer at interface |
B:52 [ASP] | A:19 [A] | Bc:51 [ASN] | B5:2517 [A] | ❌ 4BW0_B:52 no longer at interface |
B:53 [VAL] | A:19 [A] | Bc:52 [CYS] | B5:2517 [A] | ❌ 4BW0_B:53 no longer at interface |
Properties of this pair
Common ECOD label(s) |
Common RFAM label(s) |
Interface TM-score |
Interface RMSD |
Percentage identity |
Protein TM-score |
RNA TM-score |
Protein coverage |
RNA coverage |
Percentage conservation |
Apolar conservation |
H-bond conservation |
Percentage switching out |
---|---|---|---|---|---|---|---|---|---|---|---|---|
L30e-like | 0.74 | 1.81 | 0.15 | 0.81 | 0.29 | 0.8 | 0.78 | 0.76 | 0.65 | 0.47 | 0.64 |
Other pairs involving 4BW0_B_A or 7O7Y_Bc_B5
Total number of entries: 21