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All interfaces > All interologs > Interface groups > group139 > 5XTM_A_B

Interface analysis

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

5XTM_A
5XTM_B
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:34 [ARG] B:31 [G] 4.98 B:21 [A] 44.66
A:35 [LYS] B:18 [G] 2.85 base:SC 61.69
A:35 [LYS] B:20 [G] 3.64 B:32 [A] base:BB 61.69
A:35 [LYS] B:31 [G] 3.08 B:21 [A] sugar:SC 61.69
A:35 [LYS] B:32 [A] 3.06 B:20 [G] 61.69
A:36 [GLY] B:18 [G] 3.55 99.0
A:36 [GLY] B:19 [U] 3.62 99.0
A:36 [GLY] B:20 [G] 3.13 B:32 [A] 99.0
A:37 [THR] B:18 [G] 4.2 45.47
A:37 [THR] B:19 [U] 2.61 45.47
A:37 [THR] B:20 [G] 3.51 B:32 [A] 45.47
A:38 [ASN] B:20 [G] 2.99 B:32 [A] base:BB 77.08
A:38 [ASN] B:31 [G] 2.58 B:21 [A] base:SC 77.08
A:39 [GLU] B:18 [G] 3.82 70.95
A:39 [GLU] B:20 [G] 2.58 B:32 [A] base:BB, base:SC, base:SC 70.95
A:39 [GLU] B:31 [G] 2.28 B:21 [A] sugar:SC 70.95
A:40 [THR] B:20 [G] 4.92 B:32 [A] 75.72
A:42 [LYS] B:29 [C] 3.43 B:24 [G] 77.84
A:42 [LYS] B:30 [C] 2.74 B:23 [G] 77.84
A:42 [LYS] B:31 [G] 4.98 B:21 [A] 77.84
A:46 [ARG] B:29 [C] 3.88 B:24 [G] 52.13
A:46 [ARG] B:30 [C] 2.56 B:23 [G] 52.13
A:57 [ASP] B:19 [U] 3.85 98.36
A:58 [VAL] B:19 [U] 3.43 74.29
A:59 [ASP] B:19 [U] 2.67 base:BB, base:BB 63.28
A:60 [PRO] B:19 [U] 3.97 78.03
A:63 [ILE] B:19 [U] 3.28 63.23
A:84 [LYS] B:19 [U] 2.53 base:SC 80.0
A:93 [ILE] B:18 [G] 3.34 70.73
A:94 [GLU] B:17 [G] 2.83 base:SC, base:SC 51.44
A:94 [GLU] B:33 [G] 3.56 B:16 [C] 51.44
A:95 [VAL] B:17 [G] 4.34 65.04
A:95 [VAL] B:18 [G] 3.19 65.04
A:96 [ALA] B:18 [G] 3.04 sugar:BB 20.85
A:96 [ALA] B:19 [U] 3.56 20.85
A:97 [ALA] B:18 [G] 3.34 79.46
A:97 [ALA] B:19 [U] 3.45 79.46
A:98 [ALA] B:18 [G] 4.51 76.7
A:98 [ALA] B:19 [U] 2.75 76.7
A:99 [SER] B:19 [U] 4.4 65.9

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group139 5XTM_A_B A: 50s ribosomal protein l7ae, Pyrococcus horikoshii (strain atcc 700860 / dsm 12428 / jcm 9974 / nbrc 100139 / ot-3) (genetically engineered) B: RNA (47-mer), Pyrococcus horikoshii ot3 (synthetic) P62009 L30e-like ✔

Interologs

Total number of interologs for this interface: 13

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1JJ2_F_0 5XTM_A_B 0.94 0.78 0.56 0.22 L30e-like compare
5XTM_A_B 6AZ3_d_3 0.80 0.58 1.46 0.17 L30e-like compare
5XTM_A_B 6Q8U_C_A,B 0.95 0.79 0.59 0.22 L30e-like compare
5XTM_A_B 7O7Y_Al_A2 0.77 0.73 1.67 0.24 L30e-like compare
5XTM_A_B 6AZ3_G_1,7 0.91 0.7 1.59 0.27 L30e-like compare
5XTM_A_B 7O7Y_BG_B5,B8 0.68 0.71 1.4 0.22 L30e-like compare
5XTM_A_B 7O7Y_Bc_B5 0.79 0.62 1.62 0.14 L30e-like compare
5XTM_A_B 7OZQ_A_H 1.00 0.85 0.21 0.38 L30e-like compare
3LWR_C_D 5XTM_A_B 0.83 0.76 0.5 0.22 L30e-like compare
1YHQ_F_0 5XTM_A_B 0.93 0.78 0.72 0.22 L30e-like compare
4BW0_B_A 5XTM_A_B 0.94 0.87 0.57 0.22 L30e-like compare
1VQ8_F_0 5XTM_A_B 0.75 0.75 1.28 0.33 L30e-like compare
2HVY_D_E 5XTM_A_B 0.92 0.78 0.22 0.22 L30e-like compare