RNAprotDB

All interfaces > All interologs > Interface groups > group139 > 5XTM_A_B vs 7O7Y_BG_B5,B8

Interface analysis


mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Structure
Structure (with hetatm)
Chain
Chainbow

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show interface as licorice

Common contacts -

5XTM_A
5XTM_B
7O7Y_BG
7O7Y_B5,B8
Conserved?
A:39 [GLU] B:20 [G] BG:142 [THR] B5:151 [G] ✔
A:35 [LYS] B:18 [G] BG:138 [ALA] B5:149 [A] ✔
A:35 [LYS] B:20 [G] BG:138 [ALA] B5:151 [G] ✔
A:99 [SER] B:19 [U] BG:201 [THR] B5:150 [U] ✔
A:60 [PRO] B:19 [U] BG:163 [PRO] B5:150 [U] ✔
A:94 [GLU] B:17 [G] BG:196 [ARG] B5:148 [A] ✔
A:59 [ASP] B:19 [U] BG:162 [ASP] B5:150 [U] ✔
A:58 [VAL] B:19 [U] BG:161 [VAL] B5:150 [U] ✔
A:40 [THR] B:20 [G] BG:143 [VAL] B5:151 [G] ✔
A:97 [ALA] B:18 [G] BG:199 [CYS] B5:149 [A] ✔
A:97 [ALA] B:19 [U] BG:199 [CYS] B5:150 [U] ✔
A:98 [ALA] B:18 [G] BG:200 [THR] B5:149 [A] ✔
A:98 [ALA] B:19 [U] BG:200 [THR] B5:150 [U] ✔
A:96 [ALA] B:18 [G] BG:198 [THR] B5:149 [A] ✔
A:96 [ALA] B:19 [U] BG:198 [THR] B5:150 [U] ✔
A:84 [LYS] B:19 [U] BG:187 [LYS] B5:150 [U] ✔
A:36 [GLY] B:18 [G] BG:139 [GLY] B5:149 [A] ✔
A:36 [GLY] B:19 [U] BG:139 [GLY] B5:150 [U] ✔
A:36 [GLY] B:20 [G] BG:139 [GLY] B5:151 [G] ✔
A:95 [VAL] B:17 [G] BG:197 [LYS] B5:148 [A] ✔
A:38 [ASN] B:20 [G] BG:141 [ASN] B5:151 [G] ✔
A:57 [ASP] B:19 [U] BG:160 [ASP] B5:150 [U] ✔
A:37 [THR] B:18 [G] BG:140 [VAL] B5:149 [A] ✔
A:37 [THR] B:19 [U] BG:140 [VAL] B5:150 [U] ✔
A:37 [THR] B:20 [G] BG:140 [VAL] B5:151 [G] ✔
A:63 [ILE] B:19 [U] BG:166 [LEU] B5:150 [U] ✔
A:39 [GLU] B:18 [G] BG:142 [THR] B5:149 [A] ❌ 7O7Y_BG_B5,B8
A:95 [VAL] B:18 [G] BG:197 [LYS] B5:149 [A] ❌ 7O7Y_BG_B5,B8
A:93 [ILE] B:18 [G] BG:195 [HIS] B5:149 [A] ❌ 7O7Y_BG_B5,B8
A:38 [ASN] B:19 [U] BG:141 [ASN] B5:150 [U] ❌ 5XTM_A_B
A:93 [ILE] B:17 [G] BG:195 [HIS] B5:148 [A] ❌ 5XTM_A_B
A:94 [GLU] B:18 [G] BG:196 [ARG] B5:149 [A] ❌ 5XTM_A_B
A:95 [VAL] B:16 [C] BG:197 [LYS] B5:147 [A] ❌ 5XTM_B:16 no longer at interface

logo_download Export the table of contacts

Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
L30e-like 0.71 1.4 0.22 0.87 0.25 1.0 0.44 0.68 0.51 0.46 0.14


Other pairs involving 5XTM_A_B or 7O7Y_BG_B5,B8

Total number of entries: 24

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1JJ2_F_0 5XTM_A_B 0.94 0.78 0.56 0.22 L30e-like compare
1JJ2_F_0 7O7Y_BG_B5,B8 0.58 0.94 2.25 0.19 L30e-like compare
5XTM_A_B 6AZ3_d_3 0.80 0.58 1.46 0.17 L30e-like compare
5XTM_A_B 6Q8U_C_A,B 0.95 0.79 0.59 0.22 L30e-like compare
5XTM_A_B 7O7Y_Al_A2 0.77 0.73 1.67 0.24 L30e-like compare
5XTM_A_B 6AZ3_G_1,7 0.91 0.7 1.59 0.27 L30e-like compare
5XTM_A_B 7O7Y_BG_B5,B8 0.68 0.71 1.4 0.22 L30e-like compare
5XTM_A_B 7O7Y_Bc_B5 0.79 0.62 1.62 0.14 L30e-like compare
5XTM_A_B 7OZQ_A_H 1.00 0.85 0.21 0.38 L30e-like compare
6AZ3_G_2 7O7Y_BG_B5,B8 0.79 0.92 1.1 0.25 L30e-like Eukaryotic large subunit ribosomal RNA compare
3LWR_C_D 5XTM_A_B 0.83 0.76 0.5 0.22 L30e-like compare
3LWR_C_D 7O7Y_BG_B5,B8 0.53 0.74 1.47 0.35 L30e-like compare
1YHQ_F_0 5XTM_A_B 0.93 0.78 0.72 0.22 L30e-like compare
1YHQ_F_0 7O7Y_BG_B5,B8 0.59 0.94 2.25 0.24 L30e-like compare
6Q8U_C_A,B 7O7Y_BG_B5,B8 0.60 0.8 1.18 0.3 L30e-like compare
4BW0_B_A 5XTM_A_B 0.94 0.87 0.57 0.22 L30e-like compare
4BW0_B_A 7O7Y_BG_B5,B8 0.56 0.87 1.17 0.3 L30e-like compare
1VQ8_F_0 5XTM_A_B 0.75 0.75 1.28 0.33 L30e-like compare
1VQ8_F_0 7O7Y_BG_B5,B8 0.59 0.94 2.24 0.24 L30e-like compare
7O7Y_BG_B5,B8 7OZQ_A_H 0.65 0.83 1.34 0.36 L30e-like compare
2HVY_D_E 5XTM_A_B 0.92 0.78 0.22 0.22 L30e-like compare
2HVY_D_E 7O7Y_BG_B5,B8 0.55 0.71 1.77 0.4 L30e-like compare
3HAX_D_E 7O7Y_BG_B5,B8 0.54 0.76 1.46 0.39 L30e-like compare
6AZ3_G_1,7 7O7Y_BG_B5,B8 0.69 0.93 1.08 0.38 L30e-like 5.8S ribosomal RNA & Eukaryotic large subunit ribosomal RNA compare