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All interfaces > All interologs > Interface groups > group139 > 6AZ3_G_1,7

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Licorice
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Licorice
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Chain
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Conservation*

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Rim - Core

Contacts -

6AZ3_G
6AZ3_1,7
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
G:128 [ALA] 1:1730 [A] 3.88 1:1674 [U] 61.4
G:132 [SER] 7:1946 [U] 3.73 73.4
G:133 [ARG] 7:1946 [U] 3.38 85.6
G:136 [ARG] 1:1668 [G] 3.35 sugar:SC base/AA stacks 63.4
G:136 [ARG] 1:1669 [G] 2.99 sugar:SC, sugar:SC base/AA stacks 63.4
G:137 [TRP] 1:1668 [G] 3.07 base:BB 58.5
G:137 [TRP] 1:1669 [G] 4.77 58.5
G:137 [TRP] 1:1670 [A] 4.48 58.5
G:137 [TRP] 7:1945 [G] 3.6 1:7 [C] 58.5
G:137 [TRP] 7:1946 [U] 3.91 58.5
G:138 [PRO] 1:1668 [G] 4.14 94.0
G:138 [PRO] 1:1670 [A] 3.01 94.0
G:138 [PRO] 7:1944 [A2M] 4.36 1:8 [U] 94.0
G:139 [THR] 1:1668 [G] 3.17 base:SC 43.8
G:139 [THR] 1:1669 [G] 3.95 43.8
G:139 [THR] 1:1670 [A] 3.55 43.8
G:140 [PHE] 1:8 [U] 3.31 7:1944 [A2M] 63.6
G:140 [PHE] 1:9 [G] 3.2 7:1943 [C] 63.6
G:140 [PHE] 1:1670 [A] 3.71 63.6
G:140 [PHE] 7:1944 [A2M] 3.39 1:8 [U] 63.6
G:140 [PHE] 7:1945 [G] 4.3 1:7 [C] 63.6
G:141 [VAL] 7:1944 [A2M] 4.35 1:8 [U] 72.9
G:141 [VAL] 7:1945 [G] 3.33 1:7 [C] 72.9
G:141 [VAL] 7:1947 [G] 4.86 1:6 [C] 72.9
G:142 [THR] 1:1668 [G] 3.39 72.8
G:143 [MET] 1:1668 [G] 4.25 54.9
G:144 [GLN] 1:8 [U] 4.72 7:1944 [A2M] 90.8
G:144 [GLN] 7:1945 [G] 2.75 1:7 [C] base:SC, sugar:SC 90.8
G:144 [GLN] 7:1947 [G] 3.09 1:6 [C] 90.8
G:145 [ARG] 7:1945 [G] 2.7 1:7 [C] 89.8
G:145 [ARG] 7:1946 [U] 3.32 base/AA stacks 89.8
G:145 [ARG] 7:1947 [G] 2.53 1:6 [C] 89.8
G:146 [LYS] 1:1668 [G] 4.45 79.5
G:148 [ARG] 7:1947 [G] 3.42 1:6 [C] 51.6
G:148 [ARG] 7:1948 [U] 3.02 1:5 [A] 51.6
G:169 [ARG] 7:1950 [G] 3.45 1:3 [A] 58.5
G:169 [ARG] 7:1951 [A] 3.04 58.5
G:172 [ARG] 7:1949 [C] 4.15 1:4 [G] 68.1
G:172 [ARG] 7:1950 [G] 2.42 1:3 [A] 68.1
G:173 [ASN] 7:1951 [A] 4.74 43.7
G:187 [ARG] 1:122 [A] 4.61 1:148 [U] 48.3
G:187 [ARG] 1:123 [U] 4.73 1:143 [A] 48.3
G:187 [ARG] 1:140 [U] 3.05 1:125 [G] base/AA stacks 48.3
G:187 [ARG] 1:141 [U] 2.98 1:144 [G] base/AA stacks 48.3
G:187 [ARG] 1:142 [G] 3.57 1:124 [C] base:SC 48.3
G:187 [ARG] 1:143 [A] 4.84 1:123 [U] 48.3
G:188 [LYS] 1:140 [U] 3.37 1:125 [G] 28.5
G:190 [ARG] 1:121 [A] 3.38 1:147 [G] 75.7
G:190 [ARG] 1:122 [A] 3.22 1:148 [U] 75.7
G:191 [ARG] 1:139 [C] 4.82 1:126 [G] 61.9
G:201 [LYS] 1:162 [U] 4.86 1:293 [C] 19.8
G:219 [THR] 1:145 [U] 3.71 17.3
G:219 [THR] 1:147 [G] 3.87 1:121 [A] 17.3
G:220 [GLY] 1:145 [U] 3.86 98.5
G:220 [GLY] 1:146 [U] 3.6 98.5
G:220 [GLY] 1:147 [G] 3.22 1:121 [A] 98.5
G:221 [LEU] 1:145 [U] 4.2 59.6
G:221 [LEU] 1:146 [U] 3.37 59.6
G:221 [LEU] 1:147 [G] 3.68 1:121 [A] 59.6
G:222 [GLN] 1:115 [U] 4.5 1:153 [C] 83.5
G:222 [GLN] 1:119 [C] 4.88 1:149 [G] 83.5
G:222 [GLN] 1:120 [G] 2.78 base:SC, base:SC 83.5
G:222 [GLN] 1:147 [G] 3.48 1:121 [A] base:BB base/AA stacks 83.5
G:223 [GLU] 1:120 [G] 2.63 sugar:SC 73.6
G:223 [GLU] 1:145 [U] 4.2 73.6
G:223 [GLU] 1:147 [G] 3.26 1:121 [A] base:BB, base:SC 73.6
G:226 [ARG] 1:118 [C] 3.54 1:150 [G] 43.5
G:226 [ARG] 1:119 [C] 3.33 1:149 [G] 43.5
G:226 [ARG] 1:120 [G] 3.24 43.5
G:230 [LYS] 1:117 [G] 4.88 1:151 [C] 46.2
G:230 [LYS] 1:118 [C] 2.43 1:150 [G] 46.2
G:230 [LYS] 1:119 [C] 4.63 1:149 [G] 46.2
G:240 [ASN] 7:1948 [U] 4.94 1:5 [A] 67.5
G:241 [ASN] 1:146 [U] 4.67 98.1
G:241 [ASN] 7:1948 [U] 2.89 1:5 [A] sugar:SC 98.1
G:242 [VAL] 1:146 [U] 3.61 96.9
G:243 [ASP] 1:146 [U] 2.68 base:BB 74.8
G:244 [PRO] 1:146 [U] 3.38 98.8
G:247 [LEU] 1:146 [U] 3.44 63.3
G:266 [LYS] 7:1948 [U] 4.74 1:5 [A] 78.0
G:266 [LYS] 7:1949 [C] 2.67 1:4 [G] 78.0
G:266 [LYS] 7:1950 [G] 4.19 1:3 [A] 78.0
G:268 [MET] 1:6 [C] 4.56 7:1947 [G] 91.2
G:268 [MET] 1:7 [C] 4.53 7:1945 [G] 91.2
G:268 [MET] 1:146 [U] 3.21 91.2
G:269 [ALA] 1:5 [A] 4.32 7:1948 [U] 71.1
G:269 [ALA] 1:6 [C] 3.69 7:1947 [G] 71.1
G:270 [ARG] 1:4 [G] 4.11 7:1949 [C] 67.9
G:270 [ARG] 1:5 [A] 3.42 7:1948 [U] sugar:SC 67.9
G:270 [ARG] 7:1949 [C] 2.85 1:4 [G] sugar:SC 67.9
G:270 [ARG] 7:1950 [G] 4.06 1:3 [A] 67.9
G:273 [ASP] 1:5 [A] 3.51 7:1948 [U] sugar:SC 27.2
G:277 [ARG] 1:145 [U] 2.72 sugar:SC base/AA stacks 51.3
G:278 [LYS] 1:6 [C] 3.4 7:1947 [G] 86.9
G:278 [LYS] 1:7 [C] 4.24 7:1945 [G] 86.9
G:278 [LYS] 1:143 [A] 3.63 1:123 [U] 86.9
G:278 [LYS] 1:144 [G] 3.06 1:141 [U] 86.9
G:279 [THR] 1:6 [C] 3.56 7:1947 [G] 72.8
G:279 [THR] 1:7 [C] 4.17 7:1945 [G] 72.8
G:279 [THR] 1:145 [U] 4.37 72.8
G:279 [THR] 1:146 [U] 3.12 72.8
G:280 [ALA] 1:146 [U] 3.55 70.9
G:281 [THR] 1:146 [U] 2.82 69.1
G:282 [CYS] 1:146 [U] 4.39 37.9

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group139 6AZ3_G_1,7 G: 60s ribosomal protein l7a, Leishmania donovani (natural) 1: rRNA alpha, Leishmania donovani (natural) 7: rRNA 5.8s, Leishmania donovani (natural) E9B949 L30e-like Eukaryotic large subunit ribosomal RNA & 5.8S ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 11

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1JJ2_F_0 6AZ3_G_1,7 0.72 0.68 2.27 0.19 L30e-like compare
5XTM_A_B 6AZ3_G_1,7 0.91 0.7 1.59 0.27 L30e-like compare
3LWR_C_D 6AZ3_G_1,7 0.66 0.73 1.54 0.26 L30e-like compare
1YHQ_F_0 6AZ3_G_1,7 0.71 0.68 2.26 0.19 L30e-like compare
4BW0_B_A 6AZ3_G_1,7 0.69 0.85 1.34 0.2 L30e-like compare
1VQ8_F_0 6AZ3_G_1,7 0.70 0.68 2.29 0.19 L30e-like compare
2HVY_D_E 6AZ3_G_1,7 0.69 0.72 1.31 0.3 L30e-like compare
3HAX_D_E 6AZ3_G_1,7 0.66 0.74 1.4 0.26 L30e-like compare
6AZ3_G_1,7 6Q8U_C_A,B 0.83 0.77 1.38 0.2 L30e-like compare
6AZ3_G_1,7 7O7Y_BG_B5,B8 0.69 0.93 1.08 0.38 L30e-like 5.8S ribosomal RNA & Eukaryotic large subunit ribosomal RNA compare
6AZ3_G_1,7 7OZQ_A_H 0.68 0.8 1.4 0.27 L30e-like compare