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All interfaces > All interologs > Interface groups > group139 > 6AZ3_G_2

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
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Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

6AZ3_G
6AZ3_2
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
G:112 [PHE] 2:982 [C] 3.55 2:1004 [G] 41.96
G:112 [PHE] 2:998 [A] 4.41 41.96
G:113 [ALA] 2:981 [A] 2.99 2:1005 [G] sugar:BB 52.6
G:113 [ALA] 2:982 [C] 3.38 2:1004 [G] 52.6
G:114 [ALA] 2:981 [A] 3.87 2:1005 [G] 52.21
G:114 [ALA] 2:982 [C] 3.69 2:1004 [G] 52.21
G:115 [ARG] 2:980 [A] 3.38 2:1006 [A] 64.93
G:115 [ARG] 2:981 [A] 3.23 2:1005 [G] 64.93
G:116 [PRO] 2:980 [A] 4.38 2:1006 [A] 65.21
G:116 [PRO] 2:981 [A] 3.89 2:1005 [G] 65.21
G:117 [LYS] 2:967 [U] 4.3 69.83
G:117 [LYS] 2:978 [C] 3.53 69.83
G:117 [LYS] 2:979 [C] 3.45 69.83
G:117 [LYS] 2:980 [A] 3.58 2:1006 [A] base:BB 69.83
G:117 [LYS] 2:1006 [A] 4.75 2:980 [A] 69.83
G:118 [ASN] 2:967 [U] 2.97 sugar:SC base/AA stacks 64.72
G:119 [PHE] 2:967 [U] 3.51 57.87
G:119 [PHE] 2:980 [A] 3.41 2:1006 [A] 57.87
G:119 [PHE] 2:1006 [A] 3.3 2:980 [A] 57.87
G:120 [GLY] 2:967 [U] 3.8 48.54
G:121 [ILE] 2:966 [C] 4.37 75.37
G:121 [ILE] 2:967 [U] 3.97 75.37
G:121 [ILE] 2:968 [G] 3.01 75.37
G:122 [GLY] 2:968 [G] 3.42 87.27
G:122 [GLY] 2:977 [A] 4.03 87.27
G:123 [GLN] 2:967 [U] 4.5 57.75
G:123 [GLN] 2:968 [G] 3.59 57.75
G:123 [GLN] 2:977 [A] 4.26 57.75
G:124 [ASP] 2:977 [A] 3.61 44.72
G:125 [VAL] 2:977 [A] 3.9 67.32
G:125 [VAL] 2:978 [C] 3.61 67.32
G:127 [TYR] 2:1006 [A] 3.15 2:980 [A] base/AA stacks 73.49
G:127 [TYR] 2:1007 [G] 3.69 2:775 [C] 73.49
G:129 [ARG] 2:770 [A] 4.56 68.22
G:129 [ARG] 2:771 [G] 3.17 base/AA stacks 68.22
G:131 [LEU] 2:770 [A] 3.5 84.19
G:133 [ARG] 2:772 [A] 3.09 2:1010 [U] base/AA stacks 85.67
G:133 [ARG] 2:1013 [U] 2.7 85.67
G:133 [ARG] 2:1014 [U] 3.03 2:766 [A] 85.67
G:133 [ARG] 2:1015 [U] 2.89 2:765 [A] 85.67
G:134 [PHE] 2:769 [A] 2.43 2:767 [U] sugar:BB 57.99
G:134 [PHE] 2:770 [A] 3.35 57.99
G:134 [PHE] 2:771 [G] 3.55 57.99
G:134 [PHE] 2:772 [A] 3.18 2:1010 [U] 57.99
G:134 [PHE] 2:1014 [U] 3.72 2:766 [A] 57.99
G:134 [PHE] 2:1015 [U] 4.78 2:765 [A] 57.99
G:135 [MET] 2:769 [A] 4.07 2:767 [U] 83.63
G:135 [MET] 2:1014 [U] 4.66 2:766 [A] 83.63
G:136 [ARG] 2:769 [A] 3.15 2:767 [U] 63.44
G:142 [THR] 2:1014 [U] 3.21 2:766 [A] 72.87
G:145 [ARG] 2:1012 [G] 4.15 89.81
G:146 [LYS] 2:761 [A] 4.29 2:1019 [G] 79.56
G:146 [LYS] 2:1013 [U] 3.35 79.56
G:146 [LYS] 2:1014 [U] 3.98 2:766 [A] 79.56
G:148 [ARG] 2:1012 [G] 3.36 base:SC 51.67
G:149 [VAL] 2:760 [U] 3.97 66.62
G:149 [VAL] 2:1012 [G] 3.25 66.62
G:149 [VAL] 2:1013 [U] 4.39 66.62
G:150 [LEU] 2:760 [U] 4.06 88.35
G:150 [LEU] 2:761 [A] 3.88 2:1019 [G] 88.35
G:152 [ARG] 2:1011 [U] 3.56 51.48
G:152 [ARG] 2:1012 [G] 2.71 base:SC, base:SC 51.48
G:153 [ARG] 2:759 [U] 4.85 2:1020 [A] 87.46
G:153 [ARG] 2:760 [U] 2.8 87.46
G:153 [ARG] 2:1011 [U] 3.46 87.46
G:153 [ARG] 2:1012 [G] 2.3 87.46
G:154 [LEU] 2:681 [G] 3.84 2:758 [C] 73.16
G:154 [LEU] 2:760 [U] 3.3 73.16
G:155 [LYS] 2:681 [G] 4.54 2:758 [C] 88.79
G:155 [LYS] 2:682 [U] 2.51 2:757 [A] 88.79
G:155 [LYS] 2:683 [G] 4.09 2:756 [C] 88.79
G:166 [VAL] 2:783 [U] 4.38 64.94
G:166 [VAL] 2:784 [U] 4.23 64.94
G:167 [LEU] 2:784 [U] 3.57 69.84
G:168 [ASP] 2:783 [U] 3.35 64.19
G:168 [ASP] 2:784 [U] 3.16 64.19
G:169 [ARG] 2:784 [U] 2.44 base:SC 58.59
G:172 [ARG] 2:784 [U] 2.99 base:SC 68.19
G:266 [LYS] 2:784 [U] 3.4 78.07
G:301 [ARG] 2:799 [G] 4.72 14.15
G:301 [ARG] 2:800 [G] 3.27 2:795 [U] 14.15
G:302 [SER] 2:800 [G] 3.96 2:795 [U] 38.77
G:304 [ASN] 2:796 [U] 4.05 49.15
G:304 [ASN] 2:800 [G] 4.06 2:795 [U] 49.15
G:305 [ALA] 2:800 [G] 3.61 2:795 [U] 35.15
G:305 [ALA] 2:801 [C] 3.16 2:794 [C] sugar:BB 35.15
G:306 [ARG] 2:783 [U] 3.68 base/AA stacks 35.88
G:306 [ARG] 2:801 [C] 4.87 2:794 [C] 35.88
G:308 [LEU] 2:796 [U] 3.3 56.62
G:309 [SER] 2:795 [U] 4.28 2:800 [G] 57.98
G:309 [SER] 2:796 [U] 3.3 57.98
G:309 [SER] 2:800 [G] 3.54 2:795 [U] 57.98
G:310 [ARG] 2:802 [U] 3.23 2:793 [U] 51.39
G:310 [ARG] 2:803 [A] 3.92 2:792 [G] 51.39
G:311 [SER] 2:796 [U] 3.36 base:SC 0.7
G:312 [ASP] 2:794 [C] 4.81 2:801 [C] 34.02
G:313 [VAL] 2:802 [U] 3.65 2:793 [U] 8.2
G:313 [VAL] 2:803 [A] 3.7 2:792 [G] 8.2
G:316 [ARG] 2:803 [A] 3.22 2:792 [G] sugar:SC 59.71
G:316 [ARG] 2:804 [U] 4.52 2:791 [A] 59.71
G:321 [LEU] 2:682 [U] 3.75 2:757 [A] 34.4
G:321 [LEU] 2:683 [G] 3.99 2:756 [C] 34.4
G:321 [LEU] 2:760 [U] 4.94 34.4
G:322 [GLN] 2:781 [G] 4.3 2:810 [G] 30.6
G:322 [GLN] 2:782 [G] 2.98 2:809 [C] 30.6
G:322 [GLN] 2:1011 [U] 3.78 sugar:SC 30.6
G:323 [LEU] 2:758 [C] 4.64 2:681 [G] 39.78
G:323 [LEU] 2:759 [U] 4.52 2:1020 [A] 39.78
G:323 [LEU] 2:1011 [U] 2.72 sugar:BB 39.78
G:323 [LEU] 2:1012 [G] 4.73 39.78
G:324 [SER] 2:760 [U] 3.29 77.36
G:324 [SER] 2:1011 [U] 4.37 77.36
G:324 [SER] 2:1012 [G] 3.44 77.36
G:324 [SER] 2:1013 [U] 4.94 77.36
G:325 [LEU] 2:773 [G] 4.54 2:1009 [C] 4.11
G:325 [LEU] 2:1010 [U] 3.87 2:772 [A] 4.11
G:325 [LEU] 2:1011 [U] 3.56 4.11
G:325 [LEU] 2:1012 [G] 2.57 4.11
G:326 [ARG] 2:772 [A] 3.63 2:1010 [U] 74.8
G:326 [ARG] 2:773 [G] 3.42 2:1009 [C] 74.8
G:326 [ARG] 2:1012 [G] 4.37 74.8
G:326 [ARG] 2:1013 [U] 4.31 74.8
G:326 [ARG] 2:1016 [C] 3.19 2:764 [G] 74.8
G:327 [SER] 2:759 [U] 3.28 2:1020 [A] 73.69
G:327 [SER] 2:760 [U] 4.75 73.69
G:328 [ARG] 2:778 [A] 3.62 2:812 [C] 2.61
G:328 [ARG] 2:779 [U] 5.0 2.61
G:328 [ARG] 2:780 [G] 3.48 2:811 [U] 2.61
G:328 [ARG] 2:781 [G] 4.61 2:810 [G] 2.61
G:329 [ALA] 2:773 [G] 4.43 2:1009 [C] 49.83
G:329 [ALA] 2:774 [A] 3.89 2:1008 [U] 49.83
G:330 [GLU] 2:759 [U] 3.79 2:1020 [A] 25.35
G:332 [ARG] 2:774 [A] 2.74 2:1008 [U] 9.44
G:332 [ARG] 2:775 [C] 2.8 2:1007 [G] 9.44
G:332 [ARG] 2:776 [C] 4.44 9.44
G:332 [ARG] 2:777 [A] 3.2 9.44
G:332 [ARG] 2:778 [A] 3.48 2:812 [C] 9.44
G:333 [LYS] 2:774 [A] 3.08 2:1008 [U] 61.51
G:333 [LYS] 2:775 [C] 2.73 2:1007 [G] 61.51
G:333 [LYS] 2:776 [C] 3.97 61.51
G:334 [LYS] 2:757 [A] 3.19 2:682 [U] 40.31
G:334 [LYS] 2:758 [C] 3.6 2:681 [G] 40.31
G:335 [HIS] 2:779 [U] 3.53 base/AA stacks 31.81

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group139 6AZ3_G_2 G: 60s ribosomal protein l7a, Leishmania donovani (natural) 2: rRNA beta, Leishmania donovani (natural) E9B949 L30e-like Eukaryotic large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 1

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6AZ3_G_2 7O7Y_BG_B5,B8 0.79 0.92 1.1 0.25 L30e-like Eukaryotic large subunit ribosomal RNA compare