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All interfaces > All interologs > Interface groups > group139 > 6AZ3_d_3

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

6AZ3_d
6AZ3_3
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
d:27 [LEU] 3:125 [G] 4.1 15.53
d:27 [LEU] 3:127 [G] 3.55 base:BB 15.53
d:28 [GLY] 3:125 [G] 3.39 98.78
d:28 [GLY] 3:126 [A] 3.34 98.78
d:28 [GLY] 3:127 [G] 3.26 98.78
d:29 [THR] 3:125 [G] 4.35 28.39
d:29 [THR] 3:126 [A] 2.97 28.39
d:29 [THR] 3:127 [G] 3.23 28.39
d:30 [GLN] 3:127 [G] 3.23 53.94
d:31 [GLN] 3:106 [U] 2.6 42.79
d:31 [GLN] 3:125 [G] 4.42 42.79
d:31 [GLN] 3:127 [G] 2.88 base:BB, base:SC, base:SC 42.79
d:32 [ALA] 3:127 [G] 4.78 63.14
d:49 [ASN] 3:126 [A] 3.14 base:BB 98.68
d:50 [CYS] 3:126 [A] 4.88 41.83
d:51 [PRO] 3:126 [A] 3.47 87.51
d:54 [ARG] 3:126 [A] 2.94 sugar:SC, sugar:SC 27.81
d:76 [ASN] 3:126 [A] 3.53 base:SC 81.65
d:85 [LYS] 3:109 [C] 4.23 80.37
d:86 [HIS] 3:109 [C] 3.54 sugar:BB 64.34
d:87 [PHE] 3:109 [C] 3.83 base/AA stacks 55.93
d:87 [PHE] 3:125 [G] 3.71 base/AA stacks 55.93
d:88 [ARG] 3:124 [G] 4.1 3:114 [C] 34.26
d:88 [ARG] 3:125 [G] 3.72 sugar:BB 34.26
d:88 [ARG] 3:126 [A] 3.84 34.26
d:89 [THR] 3:125 [G] 3.05 sugar:SC 82.09
d:89 [THR] 3:126 [A] 3.71 82.09
d:90 [CYS] 3:125 [G] 4.6 85.09
d:90 [CYS] 3:126 [A] 3.27 85.09
d:91 [VAL] 3:126 [A] 4.39 61.73

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group139 6AZ3_d_3 d: 60s ribosomal protein l30, Leishmania donovani (natural) 3: rRNA gamma, Leishmania donovani (natural) A0A3Q8IET6 L30e-like ✔

Interologs

Total number of interologs for this interface: 8

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
5XTM_A_B 6AZ3_d_3 0.80 0.58 1.46 0.17 L30e-like compare
2HVY_D_E 6AZ3_d_3 0.71 0.59 1.6 0.17 L30e-like compare
3HAX_D_E 6AZ3_d_3 0.68 0.59 1.59 0.17 L30e-like compare
3LWR_C_D 6AZ3_d_3 0.69 0.6 1.53 0.17 L30e-like compare
6AZ3_d_3 7OZQ_A_H 0.71 0.62 1.56 0.17 L30e-like compare
6AZ3_d_3 6Q8U_C_A,B 0.71 0.68 1.69 0.17 L30e-like compare
4BW0_B_A 6AZ3_d_3 0.70 0.69 1.54 0.11 L30e-like compare
6AZ3_d_3 7O7Y_Bc_B5 0.92 0.92 0.7 0.5 L30e-like compare