Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
StructureStructure (with hetatm)
Chain
Chainbow
View
Focus on
InterfaceRNA
Protein
All
Show chains
Interface
show interface as licoriceCommon contacts -
6AZ3_d
|
6AZ3_3
|
7O7Y_Bc
|
7O7Y_B5
|
Conserved?
|
---|---|---|---|---|
d:28 [GLY] | 3:125 [G] | Bc:30 [GLY] | B5:2516 [G] | ✔ |
d:28 [GLY] | 3:126 [A] | Bc:30 [GLY] | B5:2517 [A] | ✔ |
d:28 [GLY] | 3:127 [G] | Bc:30 [GLY] | B5:2518 [G] | ✔ |
d:87 [PHE] | 3:109 [C] | Bc:89 [TYR] | B5:2503 [A] | ✔ |
d:87 [PHE] | 3:125 [G] | Bc:89 [TYR] | B5:2516 [G] | ✔ |
d:29 [THR] | 3:125 [G] | Bc:31 [TYR] | B5:2516 [G] | ✔ |
d:29 [THR] | 3:126 [A] | Bc:31 [TYR] | B5:2517 [A] | ✔ |
d:29 [THR] | 3:127 [G] | Bc:31 [TYR] | B5:2518 [G] | ✔ |
d:30 [GLN] | 3:127 [G] | Bc:32 [LYS] | B5:2518 [G] | ✔ |
d:31 [GLN] | 3:106 [U] | Bc:33 [GLN] | B5:2501 [G] | ✔ |
d:31 [GLN] | 3:125 [G] | Bc:33 [GLN] | B5:2516 [G] | ✔ |
d:31 [GLN] | 3:127 [G] | Bc:33 [GLN] | B5:2518 [G] | ✔ |
d:86 [HIS] | 3:109 [C] | Bc:88 [TYR] | B5:2503 [A] | ✔ |
d:89 [THR] | 3:125 [G] | Bc:91 [VAL] | B5:2516 [G] | ✔ |
d:89 [THR] | 3:126 [A] | Bc:91 [VAL] | B5:2517 [A] | ✔ |
d:51 [PRO] | 3:126 [A] | Bc:53 [PRO] | B5:2517 [A] | ✔ |
d:32 [ALA] | 3:127 [G] | Bc:34 [SER] | B5:2518 [G] | ✔ |
d:54 [ARG] | 3:126 [A] | Bc:56 [ARG] | B5:2517 [A] | ✔ |
d:91 [VAL] | 3:126 [A] | Bc:93 [THR] | B5:2517 [A] | ✔ |
d:90 [CYS] | 3:125 [G] | Bc:92 [CYS] | B5:2516 [G] | ✔ |
d:90 [CYS] | 3:126 [A] | Bc:92 [CYS] | B5:2517 [A] | ✔ |
d:76 [ASN] | 3:126 [A] | Bc:78 [ASN] | B5:2517 [A] | ✔ |
d:49 [ASN] | 3:126 [A] | Bc:51 [ASN] | B5:2517 [A] | ✔ |
d:88 [ARG] | 3:124 [G] | Bc:90 [ARG] | B5:2515 [C] | ✔ |
d:88 [ARG] | 3:125 [G] | Bc:90 [ARG] | B5:2516 [G] | ✔ |
d:88 [ARG] | 3:126 [A] | Bc:90 [ARG] | B5:2517 [A] | ✔ |
d:27 [LEU] | 3:125 [G] | Bc:29 [LEU] | B5:2516 [G] | ✔ |
d:27 [LEU] | 3:127 [G] | Bc:29 [LEU] | B5:2518 [G] | ✔ |
d:50 [CYS] | 3:126 [A] | Bc:52 [CYS] | B5:2517 [A] | ✔ |
d:30 [GLN] | 3:106 [U] | Bc:32 [LYS] | B5:2501 [G] | ❌ 6AZ3_d_3 |
d:30 [GLN] | 3:104 [U] | Bc:32 [LYS] | B5:2499 [U] | ❌ 6AZ3_3:104 no longer at interface |
d:30 [GLN] | 3:105 [U] | Bc:32 [LYS] | B5:2500 [G] | ❌ 6AZ3_3:105 no longer at interface |
d:34 [THR] | 3:104 [U] | Bc:36 [LYS] | B5:2499 [U] | ❌ 6AZ3_d:34, 6AZ3_3:104 no longer at interface |
d:34 [THR] | 3:105 [U] | Bc:36 [LYS] | B5:2500 [G] | ❌ 6AZ3_d:34, 6AZ3_3:105 no longer at interface |
d:85 [LYS] | 3:109 [C] | Bc:87 [LYS] | B5:2503 [A] | ❌ 7O7Y_Bc:87 no longer at interface |
Properties of this pair
Common ECOD label(s) |
Common RFAM label(s) |
Interface TM-score |
Interface RMSD |
Percentage identity |
Protein TM-score |
RNA TM-score |
Protein coverage |
RNA coverage |
Percentage conservation |
Apolar conservation |
H-bond conservation |
Percentage switching out |
---|---|---|---|---|---|---|---|---|---|---|---|---|
L30e-like | 0.92 | 0.7 | 0.50 | 0.97 | 0.85 | 0.94 | 1.0 | 0.92 | 0.92 | 0.50 | 0.83 |
Other pairs involving 6AZ3_d_3 or 7O7Y_Bc_B5
Total number of entries: 15