Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
StructureStructure (with hetatm)
Chain
Chainbow
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InterfaceRNA
Protein
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Show chains
Interface
show interface as licoriceCommon contacts -
6AZ3_d
|
6AZ3_3
|
7OZQ_A
|
7OZQ_H
|
Conserved?
|
---|---|---|---|---|
d:28 [GLY] | 3:125 [G] | A:35 [GLY] | H:28 [A] | ✔ |
d:28 [GLY] | 3:126 [A] | A:35 [GLY] | H:29 [U] | ✔ |
d:28 [GLY] | 3:127 [G] | A:35 [GLY] | H:30 [G] | ✔ |
d:87 [PHE] | 3:125 [G] | A:94 [VAL] | H:28 [A] | ✔ |
d:29 [THR] | 3:125 [G] | A:36 [THR] | H:28 [A] | ✔ |
d:29 [THR] | 3:126 [A] | A:36 [THR] | H:29 [U] | ✔ |
d:29 [THR] | 3:127 [G] | A:36 [THR] | H:30 [G] | ✔ |
d:30 [GLN] | 3:127 [G] | A:37 [ASN] | H:30 [G] | ✔ |
d:31 [GLN] | 3:106 [U] | A:38 [GLU] | H:5 [U] | ✔ |
d:31 [GLN] | 3:125 [G] | A:38 [GLU] | H:28 [A] | ✔ |
d:31 [GLN] | 3:127 [G] | A:38 [GLU] | H:30 [G] | ✔ |
d:89 [THR] | 3:125 [G] | A:96 [ALA] | H:28 [A] | ✔ |
d:89 [THR] | 3:126 [A] | A:96 [ALA] | H:29 [U] | ✔ |
d:51 [PRO] | 3:126 [A] | A:59 [PRO] | H:29 [U] | ✔ |
d:32 [ALA] | 3:127 [G] | A:39 [THR] | H:30 [G] | ✔ |
d:54 [ARG] | 3:126 [A] | A:62 [ILE] | H:29 [U] | ✔ |
d:91 [VAL] | 3:126 [A] | A:98 [SER] | H:29 [U] | ✔ |
d:90 [CYS] | 3:125 [G] | A:97 [ALA] | H:28 [A] | ✔ |
d:90 [CYS] | 3:126 [A] | A:97 [ALA] | H:29 [U] | ✔ |
d:76 [ASN] | 3:126 [A] | A:83 [LYS] | H:29 [U] | ✔ |
d:49 [ASN] | 3:126 [A] | A:56 [ASP] | H:29 [U] | ✔ |
d:88 [ARG] | 3:125 [G] | A:95 [ALA] | H:28 [A] | ✔ |
d:88 [ARG] | 3:126 [A] | A:95 [ALA] | H:29 [U] | ✔ |
d:27 [LEU] | 3:125 [G] | A:34 [LYS] | H:28 [A] | ✔ |
d:27 [LEU] | 3:127 [G] | A:34 [LYS] | H:30 [G] | ✔ |
d:50 [CYS] | 3:126 [A] | A:57 [VAL] | H:29 [U] | ✔ |
d:88 [ARG] | 3:124 [G] | A:95 [ALA] | H:27 [G] | ❌ 7OZQ_A_H |
d:30 [GLN] | 3:126 [A] | A:37 [ASN] | H:29 [U] | ❌ 6AZ3_d_3 |
d:85 [LYS] | 3:125 [G] | A:92 [ILE] | H:28 [A] | ❌ 6AZ3_d_3 |
d:86 [HIS] | 3:124 [G] | A:93 [GLU] | H:27 [G] | ❌ 6AZ3_d_3 |
d:87 [PHE] | 3:124 [G] | A:94 [VAL] | H:27 [G] | ❌ 6AZ3_d_3 |
d:26 [VAL] | 3:105 [U] | A:33 [ARG] | H:4 [C] | ❌ 6AZ3_d:26, 6AZ3_3:105 no longer at interface |
d:34 [THR] | 3:105 [U] | A:41 [LYS] | H:4 [C] | ❌ 6AZ3_d:34, 6AZ3_3:105 no longer at interface |
d:34 [THR] | 3:104 [U] | A:41 [LYS] | H:3 [A] | ❌ 6AZ3_d:34, 6AZ3_3:104 no longer at interface |
d:38 [GLN] | 3:105 [U] | A:45 [ARG] | H:4 [C] | ❌ 6AZ3_d:38, 6AZ3_3:105 no longer at interface |
d:38 [GLN] | 3:104 [U] | A:45 [ARG] | H:3 [A] | ❌ 6AZ3_d:38, 6AZ3_3:104 no longer at interface |
d:86 [HIS] | 3:115 [G] | A:93 [GLU] | H:7 [G] | ❌ 6AZ3_3:115 no longer at interface |
d:26 [VAL] | 3:106 [U] | A:33 [ARG] | H:5 [U] | ❌ 6AZ3_d:26 no longer at interface |
Properties of this pair
Common ECOD label(s) |
Common RFAM label(s) |
Interface TM-score |
Interface RMSD |
Percentage identity |
Protein TM-score |
RNA TM-score |
Protein coverage |
RNA coverage |
Percentage conservation |
Apolar conservation |
H-bond conservation |
Percentage switching out |
---|---|---|---|---|---|---|---|---|---|---|---|---|
L30e-like | 0.62 | 1.56 | 0.17 | 0.86 | 0.2 | 1.0 | 0.83 | 0.71 | 0.54 | 0.27 | 0.58 |
Other pairs involving 6AZ3_d_3 or 7OZQ_A_H
Total number of entries: 20