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All interfaces > All interologs > Interface groups > group139 > 6Q8U_C_A,B

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

6Q8U_C
6Q8U_A,B
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
C:29 [LYS] A:16 [G] 4.42 B:30 [6MZ] 40.11
C:30 [LYS] A:16 [G] 3.92 B:30 [6MZ] 72.9
C:30 [LYS] A:17 [A] 3.6 B:29 [G] 72.9
C:30 [LYS] B:27 [A] 3.18 base:SC 72.9
C:30 [LYS] B:29 [G] 3.37 A:17 [A] base:BB 72.9
C:31 [GLY] B:27 [A] 3.96 98.95
C:31 [GLY] B:28 [A] 3.7 98.95
C:31 [GLY] B:29 [G] 2.91 A:17 [A] 98.95
C:32 [THR] B:27 [A] 4.2 44.05
C:32 [THR] B:28 [A] 2.61 44.05
C:32 [THR] B:29 [G] 3.3 A:17 [A] 44.05
C:33 [ASN] A:15 [G] 4.24 B:31 [A] 69.12
C:33 [ASN] A:16 [G] 3.05 B:30 [6MZ] base:SC 69.12
C:33 [ASN] B:28 [A] 4.97 69.12
C:33 [ASN] B:29 [G] 2.96 A:17 [A] base:BB base/AA stacks 69.12
C:34 [GLU] A:16 [G] 2.83 B:30 [6MZ] sugar:SC base/AA stacks 74.57
C:34 [GLU] B:27 [A] 4.6 74.57
C:34 [GLU] B:29 [G] 2.63 A:17 [A] base:BB, base:SC, base:SC 74.57
C:35 [THR] B:29 [G] 4.59 A:17 [A] 83.22
C:37 [LYS] A:14 [G] 3.02 B:32 [C] 75.27
C:37 [LYS] A:15 [G] 2.63 B:31 [A] 75.27
C:37 [LYS] A:16 [G] 4.75 B:30 [6MZ] 75.27
C:41 [ARG] A:14 [G] 4.15 B:32 [C] 58.63
C:41 [ARG] A:15 [G] 3.3 B:31 [A] 58.63
C:54 [ASP] B:28 [A] 2.76 base:BB 59.04
C:55 [PRO] B:28 [A] 3.72 67.88
C:58 [ILE] B:28 [A] 3.25 62.76
C:79 [LYS] B:28 [A] 3.02 base:SC 78.99
C:88 [ILE] B:27 [A] 3.53 74.71
C:89 [GLU] A:18 [G] 4.33 B:25 [C] 56.51
C:89 [GLU] B:26 [G] 2.97 base:SC 56.51
C:90 [VAL] B:26 [G] 3.41 69.23
C:90 [VAL] B:27 [A] 3.39 69.23
C:91 [PRO] B:27 [A] 2.97 sugar:BB 36.72
C:91 [PRO] B:28 [A] 3.65 36.72
C:92 [CYS] B:27 [A] 3.35 76.28
C:92 [CYS] B:28 [A] 3.45 76.28
C:93 [ALA] B:27 [A] 4.46 71.99
C:93 [ALA] B:28 [A] 2.74 71.99
C:94 [SER] B:28 [A] 4.5 65.64

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group139 6Q8U_C_A,B C: 50s ribosomal protein l7ae, Archaeoglobus fulgidus (strain atcc 49558 / vc-16 / dsm 4304 / jcm 9628 / nbrc 100126) (genetically engineered) A: Haloarcula marismortui (synthetic) B: Haloarcula marismortui (synthetic) O29494 L30e-like ✔

Interologs

Total number of interologs for this interface: 14

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1JJ2_F_0 6Q8U_C_A,B 0.89 0.85 0.61 0.44 L30e-like compare
5XTM_A_B 6Q8U_C_A,B 0.95 0.79 0.59 0.22 L30e-like compare
3LWR_C_D 6Q8U_C_A,B 0.79 0.83 0.49 0.56 L30e-like compare
6AZ3_d_3 6Q8U_C_A,B 0.71 0.68 1.69 0.17 L30e-like compare
1YHQ_F_0 6Q8U_C_A,B 0.88 0.85 0.58 0.44 L30e-like compare
6Q8U_C_A,B 7O7Y_Al_A2 0.87 0.66 1.35 0.22 L30e-like compare
6Q8U_C_A,B 7O7Y_BG_B5,B8 0.60 0.8 1.18 0.3 L30e-like compare
6Q8U_C_A,B 7OZQ_A_H 0.92 0.87 0.5 0.5 L30e-like compare
6Q8U_C_A,B 7O7Y_Bc_B5 0.78 0.71 1.79 0.15 L30e-like compare
4BW0_B_A 6Q8U_C_A,B 0.99 0.95 0.45 1.0 L30e-like compare
1VQ8_F_0 6Q8U_C_A,B 0.91 0.85 0.69 0.44 L30e-like compare
2HVY_D_E 6Q8U_C_A,B 0.84 0.84 0.4 0.56 L30e-like compare
3HAX_D_E 6Q8U_C_A,B 0.89 0.84 0.42 0.56 L30e-like compare
6AZ3_G_1,7 6Q8U_C_A,B 0.83 0.77 1.38 0.2 L30e-like compare