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All interfaces > All interologs > Interface groups > group139 > 7O7Y_Al_A2

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
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Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

7O7Y_Al
7O7Y_A2
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
Al:33 [ARG] A2:1285 [A] 3.02 62.83
Al:33 [ARG] A2:1287 [G] 3.82 A2:1314 [A] base:BB 62.83
Al:33 [ARG] A2:1314 [A] 4.72 A2:1287 [G] 62.83
Al:34 [GLY] A2:1285 [A] 3.51 99.0
Al:34 [GLY] A2:1286 [G] 4.07 99.0
Al:34 [GLY] A2:1287 [G] 3.18 A2:1314 [A] 99.0
Al:35 [ILE] A2:1285 [A] 4.6 70.77
Al:35 [ILE] A2:1286 [G] 3.35 70.77
Al:35 [ILE] A2:1287 [G] 3.26 A2:1314 [A] 70.77
Al:36 [ARG] A2:1287 [G] 2.94 A2:1314 [A] base:BB 61.33
Al:36 [ARG] A2:1311 [U] 4.05 A2:1290 [U] 61.33
Al:36 [ARG] A2:1313 [G] 3.33 61.33
Al:37 [GLU] A2:1287 [G] 2.86 A2:1314 [A] base:SC 81.57
Al:40 [LYS] A2:1311 [U] 4.76 A2:1290 [U] 74.31
Al:40 [LYS] A2:1312 [C] 2.65 A2:1289 [OMU] 74.31
Al:40 [LYS] A2:1313 [G] 4.11 74.31
Al:55 [ASN] A2:1286 [G] 3.97 71.13
Al:56 [CYS] A2:1286 [G] 3.45 63.66
Al:57 [ASP] A2:1286 [G] 3.09 base:BB 59.72
Al:58 [GLU] A2:1286 [G] 3.43 60.29
Al:61 [TYR] A2:1286 [G] 3.76 81.97
Al:82 [ASN] A2:1286 [G] 3.41 base:SC 56.14
Al:90 [GLY] A2:1285 [A] 4.66 79.33
Al:91 [LEU] A2:1285 [A] 3.54 54.66
Al:93 [LYS] A2:1281 [G] 4.97 A2:1318 [C] 74.81
Al:102 [LYS] A2:1282 [G] 4.56 A2:1317 [C] 80.03
Al:102 [LYS] A2:1283 [A] 3.08 80.03
Al:102 [LYS] A2:1284 [C] 3.36 80.03
Al:104 [VAL] A2:1284 [C] 4.42 73.98
Al:104 [VAL] A2:1285 [A] 3.18 73.98
Al:105 [GLY] A2:1285 [A] 4.06 30.05
Al:105 [GLY] A2:1286 [G] 3.63 30.05
Al:106 [CYS] A2:1285 [A] 3.27 57.75
Al:106 [CYS] A2:1286 [G] 3.27 57.75
Al:107 [SER] A2:1285 [A] 4.6 94.75
Al:107 [SER] A2:1286 [G] 2.46 94.75
Al:108 [CYS] A2:1285 [A] 4.69 68.59
Al:108 [CYS] A2:1286 [G] 3.99 68.59

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group139 7O7Y_Al_A2 Al: 40s ribosomal protein s12, Oryctolagus cuniculus (natural) A2: 18s rRNA, Oryctolagus cuniculus (natural) G1SFR8 L30e-like Eukaryotic small subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 6

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
5XTM_A_B 7O7Y_Al_A2 0.77 0.73 1.67 0.24 L30e-like compare
3LWR_C_D 7O7Y_Al_A2 0.88 0.6 1.41 0.2 L30e-like compare
6Q8U_C_A,B 7O7Y_Al_A2 0.87 0.66 1.35 0.22 L30e-like compare
4BW0_B_A 7O7Y_Al_A2 0.85 0.75 1.35 0.22 L30e-like compare
2HVY_D_E 7O7Y_Al_A2 0.99 0.6 1.49 0.25 L30e-like compare
3HAX_D_E 7O7Y_Al_A2 0.97 0.6 1.46 0.24 L30e-like compare