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All interfaces > All interologs > Interface groups > group139 > 7O7Y_BG_B5,B8

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Licorice
Surface

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Licorice
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Chain
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Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

7O7Y_BG
7O7Y_B5,B8
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
BG:32 [PHE] B5:3857 [G] 3.87 B5:3901 [C] 52.61
BG:33 [GLU] B5:3856 [A] 2.66 B5:3902 [G] sugar:BB 69.49
BG:33 [GLU] B5:3857 [G] 3.42 B5:3901 [C] 69.49
BG:34 [LYS] B5:3856 [A] 3.94 B5:3902 [G] 54.84
BG:34 [LYS] B5:3857 [G] 3.27 B5:3901 [C] 54.84
BG:35 [ARG] B5:3855 [A] 3.31 B5:3903 [A] 52.52
BG:35 [ARG] B5:3856 [A] 2.9 B5:3902 [G] base:BB, sugar:SC 52.52
BG:35 [ARG] B5:3857 [G] 4.97 B5:3901 [C] 52.52
BG:36 [PRO] B5:3855 [A] 4.11 B5:3903 [A] 58.32
BG:36 [PRO] B5:3856 [A] 3.55 B5:3902 [G] 58.32
BG:37 [LYS] B5:3853 [C] 3.76 72.24
BG:37 [LYS] B5:3854 [C] 3.23 B5:2435 [U] 72.24
BG:37 [LYS] B5:3855 [A] 3.63 B5:3903 [A] 72.24
BG:37 [LYS] B5:3903 [A] 4.59 B5:3855 [A] 72.24
BG:38 [ASN] B5:3844 [C] 2.95 sugar:SC 68.48
BG:39 [PHE] B5:3815 [G] 4.93 59.6
BG:39 [PHE] B5:3844 [C] 4.82 59.6
BG:39 [PHE] B5:3855 [A] 3.65 B5:3903 [A] 59.6
BG:39 [PHE] B5:3903 [A] 3.72 B5:3855 [A] 59.6
BG:40 [GLY] B5:3844 [C] 3.21 65.47
BG:41 [ILE] B5:3844 [C] 3.09 81.38
BG:41 [ILE] B5:3845 [U] 2.99 81.38
BG:42 [GLY] B5:3845 [U] 3.5 82.33
BG:42 [GLY] B5:3852 [G] 4.52 82.33
BG:43 [GLN] B5:3844 [C] 2.32 sugar:SC 56.86
BG:43 [GLN] B5:3845 [U] 3.01 56.86
BG:43 [GLN] B5:3852 [G] 2.24 base:BB 56.86
BG:44 [ASP] B5:3852 [G] 3.84 57.5
BG:45 [ILE] B5:3852 [G] 3.59 66.76
BG:45 [ILE] B5:3853 [C] 3.18 66.76
BG:46 [GLN] B5:3814 [G] 3.85 56.61
BG:46 [GLN] B5:3815 [G] 3.25 base/AA stacks 56.61
BG:47 [PRO] B5:3814 [G] 3.14 base:BB 73.59
BG:47 [PRO] B5:3903 [A] 3.6 B5:3855 [A] 73.59
BG:48 [LYS] B5:3814 [G] 2.77 base:SC 71.21
BG:48 [LYS] B5:3903 [A] 3.95 B5:3855 [A] 71.21
BG:49 [ARG] B5:3814 [G] 3.58 68.45
BG:49 [ARG] B5:3815 [G] 3.82 base/AA stacks 68.45
BG:49 [ARG] B5:3903 [A] 4.59 B5:3855 [A] 68.45
BG:51 [LEU] B5:3814 [G] 3.44 81.65
BG:52 [THR] B8:4958 [C] 2.68 base:BB 72.67
BG:53 [ARG] B5:3816 [C] 2.92 B5:3907 [G] base:SC base/AA stacks 89.06
BG:53 [ARG] B5:3907 [G] 3.07 B5:3816 [C] base/AA stacks 89.06
BG:53 [ARG] B5:3908 [C] 4.7 89.06
BG:53 [ARG] B5:3909 [U] 2.7 89.06
BG:53 [ARG] B5:3910 [C] 3.72 B5:3810 [G] 89.06
BG:53 [ARG] B5:3911 [C] 3.02 B5:3809 [G] 89.06
BG:53 [ARG] B8:4958 [C] 3.67 89.06
BG:54 [PHE] B5:3813 [A] 2.79 B5:3811 [U] sugar:BB 72.04
BG:54 [PHE] B5:3814 [G] 3.62 72.04
BG:54 [PHE] B5:3815 [G] 3.56 72.04
BG:54 [PHE] B5:3816 [C] 3.79 B5:3907 [G] 72.04
BG:54 [PHE] B5:3910 [C] 3.64 B5:3810 [G] 72.04
BG:55 [VAL] B5:3813 [A] 3.77 B5:3811 [U] 89.11
BG:55 [VAL] B5:3910 [C] 4.51 B5:3810 [G] 89.11
BG:56 [LYS] B5:2314 [G] 3.71 B5:2312 [C] 73.81
BG:56 [LYS] B5:3813 [A] 3.43 B5:3811 [U] 73.81
BG:57 [TRP] B5:2315 [A] 4.42 66.41
BG:57 [TRP] B5:3813 [A] 4.77 B5:3811 [U] 66.41
BG:57 [TRP] B8:4957 [G] 4.03 B5:7 [C] 66.41
BG:57 [TRP] B8:4958 [C] 3.19 base:SC 66.41
BG:58 [PRO] B5:2315 [A] 3.25 91.6
BG:59 [ARG] B5:2313 [C] 4.22 50.46
BG:59 [ARG] B5:2314 [G] 3.63 B5:2312 [C] 50.46
BG:59 [ARG] B5:2315 [A] 3.17 50.46
BG:60 [TYR] B5:8 [U] 4.27 B8:4956 [A] 66.24
BG:60 [TYR] B5:9 [C] 3.89 B8:4955 [G] 66.24
BG:60 [TYR] B5:2315 [A] 3.36 base/AA stacks 66.24
BG:60 [TYR] B8:4956 [A] 2.78 B5:8 [U] base:SC, sugar:SC 66.24
BG:60 [TYR] B8:4957 [G] 3.83 B5:7 [C] 66.24
BG:61 [ILE] B8:4956 [A] 3.75 B5:8 [U] 76.12
BG:61 [ILE] B8:4957 [G] 3.28 B5:7 [C] 76.12
BG:61 [ILE] B8:4959 [G] 4.58 B5:6 [C] 76.12
BG:62 [ARG] B5:2314 [G] 4.21 B5:2312 [C] 74.95
BG:62 [ARG] B5:2315 [A] 4.63 74.95
BG:62 [ARG] B5:3813 [A] 3.41 B5:3811 [U] 74.95
BG:62 [ARG] B5:3910 [C] 4.42 B5:3810 [G] 74.95
BG:64 [GLN] B5:8 [U] 4.75 B8:4956 [A] 93.29
BG:64 [GLN] B8:4957 [G] 2.78 B5:7 [C] base:SC, sugar:SC 93.29
BG:64 [GLN] B8:4959 [G] 3.04 B5:6 [C] 93.29
BG:65 [ARG] B8:4957 [G] 3.15 B5:7 [C] 94.19
BG:65 [ARG] B8:4958 [C] 3.2 base/AA stacks 94.19
BG:65 [ARG] B8:4959 [G] 2.76 B5:6 [C] 94.19
BG:66 [GLN] B5:3909 [U] 3.86 81.22
BG:66 [GLN] B5:3910 [C] 4.29 B5:3810 [G] 81.22
BG:67 [ARG] B8:4959 [G] 3.69 B5:6 [C] sugar:SC 71.36
BG:68 [ALA] B8:4959 [G] 4.24 B5:6 [C] 60.16
BG:68 [ALA] B8:4960 [U] 4.13 B5:5 [A] 60.16
BG:69 [ILE] B5:3804 [G] 4.69 78.17
BG:69 [ILE] B5:3908 [C] 3.78 78.17
BG:69 [ILE] B5:3909 [U] 3.33 78.17
BG:70 [LEU] B5:3804 [G] 3.6 88.86
BG:72 [LYS] B5:3908 [C] 3.61 58.79
BG:72 [LYS] B8:4960 [U] 4.71 B5:5 [A] 58.79
BG:73 [ARG] B5:3803 [U] 3.94 B5:3916 [A] 88.74
BG:73 [ARG] B5:3804 [G] 2.92 88.74
BG:73 [ARG] B5:3908 [C] 3.19 88.74
BG:73 [ARG] B5:3909 [U] 3.75 88.74
BG:74 [LEU] B5:3804 [G] 3.4 74.04
BG:75 [LYS] B5:3672 [U] 3.35 B5:3801 [A] 90.04
BG:75 [LYS] B5:3673 [G] 3.22 B5:3800 [C] 90.04
BG:89 [ARG] B8:4963 [C] 2.9 B5:2 [G] 67.28
BG:89 [ARG] B8:4964 [U] 3.55 B5:1 [C] 67.28
BG:93 [THR] B8:4963 [C] 4.38 B5:2 [G] 57.72
BG:105 [GLU] B5:119 [G] 3.39 base/AA stacks 89.72
BG:107 [LYS] B5:145 [G] 4.75 B5:124 [C] 45.16
BG:107 [LYS] B5:146 [G] 4.93 B5:123 [C] 45.16
BG:108 [GLN] B5:143 [C] 3.17 41.93
BG:108 [GLN] B5:145 [G] 4.28 B5:124 [C] 41.93
BG:110 [LYS] B5:119 [G] 3.11 sugar:SC 81.81
BG:110 [LYS] B5:120 [A] 4.25 B5:151 [G] 81.81
BG:110 [LYS] B5:121 [A] 2.35 B5:152 [U] 81.81
BG:111 [LYS] B5:143 [C] 4.1 71.29
BG:113 [ARG] B5:119 [G] 2.83 base/AA stacks 94.62
BG:117 [ARG] B5:119 [G] 4.17 0.53
BG:132 [ARG] B5:119 [G] 3.29 base/AA stacks 70.34
BG:133 [PRO] B5:119 [G] 4.87 70.32
BG:135 [VAL] B5:119 [G] 4.72 4.3
BG:137 [ARG] B5:118 [C] 4.8 B5:153 [G] 74.32
BG:138 [ALA] B5:149 [A] 3.42 37.54
BG:138 [ALA] B5:151 [G] 3.81 B5:120 [A] 37.54
BG:139 [GLY] B5:149 [A] 3.49 98.7
BG:139 [GLY] B5:150 [U] 3.55 98.7
BG:139 [GLY] B5:151 [G] 3.2 B5:120 [A] 98.7
BG:140 [VAL] B5:149 [A] 4.28 55.83
BG:140 [VAL] B5:150 [U] 2.92 55.83
BG:140 [VAL] B5:151 [G] 3.75 B5:120 [A] 55.83
BG:141 [ASN] B5:115 [C] 4.91 83.16
BG:141 [ASN] B5:150 [U] 4.96 83.16
BG:141 [ASN] B5:151 [G] 2.66 B5:120 [A] base:SC 83.16
BG:142 [THR] B5:151 [G] 2.77 B5:120 [A] base:BB, base:SC, base:SC 77.01
BG:143 [VAL] B5:151 [G] 4.95 B5:120 [A] 87.93
BG:145 [THR] B5:116 [G] 4.1 B5:155 [C] 44.69
BG:145 [THR] B5:117 [C] 3.39 B5:154 [G] 44.69
BG:148 [GLU] B5:116 [G] 3.77 B5:155 [C] 92.01
BG:149 [ASN] B5:117 [C] 4.16 B5:154 [G] 37.9
BG:159 [HIS] B8:4960 [U] 3.0 B5:5 [A] sugar:SC 74.87
BG:159 [HIS] B8:4961 [C] 3.26 B5:4 [G] 74.87
BG:160 [ASP] B5:150 [U] 4.2 97.94
BG:160 [ASP] B8:4960 [U] 2.94 B5:5 [A] sugar:SC 97.94
BG:161 [VAL] B5:150 [U] 3.77 99.0
BG:162 [ASP] B5:150 [U] 2.42 base:BB, base:BB 78.45
BG:163 [PRO] B5:150 [U] 3.32 98.27
BG:166 [LEU] B5:150 [U] 3.3 63.75
BG:185 [LYS] B8:4960 [U] 4.84 B5:5 [A] 79.78
BG:185 [LYS] B8:4961 [C] 2.72 B5:4 [G] 79.78
BG:185 [LYS] B8:4962 [G] 4.17 B5:3 [C] 79.78
BG:186 [GLY] B8:4961 [C] 4.42 B5:4 [G] 62.06
BG:187 [LYS] B5:6 [C] 4.0 B8:4959 [G] 91.3
BG:187 [LYS] B5:7 [C] 3.98 B8:4957 [G] 91.3
BG:187 [LYS] B5:150 [U] 2.65 base:SC 91.3
BG:188 [ALA] B5:5 [A] 3.38 B8:4960 [U] 72.28
BG:188 [ALA] B5:6 [C] 3.29 B8:4959 [G] 72.28
BG:189 [ARG] B8:4961 [C] 4.47 B5:4 [G] 64.52
BG:189 [ARG] B8:4962 [G] 3.51 B5:3 [C] 64.52
BG:192 [ARG] B5:5 [A] 3.78 B8:4960 [U] 46.75
BG:192 [ARG] B5:6 [C] 4.76 B8:4959 [G] 46.75
BG:195 [HIS] B5:148 [A] 4.86 69.58
BG:196 [ARG] B5:148 [A] 4.57 47.28
BG:196 [ARG] B5:149 [A] 3.23 sugar:SC base/AA stacks 47.28
BG:197 [LYS] B5:5 [A] 4.87 B8:4960 [U] 92.46
BG:197 [LYS] B5:6 [C] 3.34 B8:4959 [G] 92.46
BG:197 [LYS] B5:7 [C] 4.32 B8:4957 [G] 92.46
BG:197 [LYS] B5:147 [A] 2.85 B5:122 [U] 92.46
BG:197 [LYS] B5:148 [A] 2.7 92.46
BG:198 [THR] B5:6 [C] 3.17 B8:4959 [G] 69.39
BG:198 [THR] B5:7 [C] 3.88 B8:4957 [G] 69.39
BG:198 [THR] B5:149 [A] 4.8 69.39
BG:198 [THR] B5:150 [U] 3.79 69.39
BG:199 [CYS] B5:149 [A] 3.41 74.26
BG:199 [CYS] B5:150 [U] 3.37 74.26
BG:200 [THR] B5:149 [A] 4.74 70.65
BG:200 [THR] B5:150 [U] 2.33 70.65
BG:201 [THR] B5:150 [U] 4.63 26.77
BG:240 [ASN] B5:3672 [U] 4.9 B5:3801 [A] 43.67
BG:241 [VAL] B5:3908 [C] 3.47 29.84
BG:242 [LEU] B5:3802 [C] 3.93 B5:3671 [G] 49.12
BG:242 [LEU] B5:3803 [U] 3.89 B5:3916 [A] 49.12
BG:242 [LEU] B5:3804 [G] 4.98 49.12
BG:242 [LEU] B5:3908 [C] 3.47 49.12
BG:243 [GLY] B5:3804 [G] 4.62 74.88
BG:243 [GLY] B5:3908 [C] 3.56 74.88
BG:244 [PRO] B5:3817 [G] 4.8 B5:3906 [C] 0.18
BG:244 [PRO] B5:3907 [G] 3.47 B5:3816 [C] 0.18
BG:244 [PRO] B5:3908 [C] 3.28 0.18
BG:245 [LYS] B5:3816 [C] 3.12 B5:3907 [G] base:SC, sugar:SC 73.14
BG:245 [LYS] B5:3817 [G] 3.62 B5:3906 [C] 73.14
BG:245 [LYS] B5:3907 [G] 3.78 B5:3816 [C] 73.14
BG:245 [LYS] B5:3911 [C] 2.62 B5:3809 [G] 73.14
BG:245 [LYS] B5:3912 [G] 4.76 B5:3808 [C] 73.14
BG:246 [SER] B5:3802 [C] 4.64 B5:3671 [G] 75.22
BG:246 [SER] B5:3803 [U] 2.69 B5:3916 [A] 75.22
BG:248 [ALA] B5:3817 [G] 3.94 B5:3906 [C] 13.01
BG:248 [ALA] B5:3818 [G] 4.06 B5:3905 [C] 13.01
BG:249 [ARG] B5:3802 [C] 4.77 B5:3671 [G] 39.24
BG:249 [ARG] B5:3803 [U] 2.92 B5:3916 [A] 39.24
BG:252 [LYS] B5:3818 [G] 2.69 B5:3905 [C] 57.87
BG:259 [LYS] B5:3839 [U] 3.41 B5:3826 [A] 9.43
BG:259 [LYS] B5:3840 [C] 4.94 B5:3825 [G] 9.43

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group139 7O7Y_BG_B5,B8 BG: Ribosomal protein el8, Oryctolagus cuniculus (natural) B5: 28s rRNA, Oryctolagus cuniculus (natural) B8: 5.8s rRNA, Oryctolagus cuniculus (natural) L30e-like Eukaryotic large subunit ribosomal RNA & 5.8S ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 12

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1JJ2_F_0 7O7Y_BG_B5,B8 0.58 0.94 2.25 0.19 L30e-like compare
5XTM_A_B 7O7Y_BG_B5,B8 0.68 0.71 1.4 0.22 L30e-like compare
6AZ3_G_2 7O7Y_BG_B5,B8 0.79 0.92 1.1 0.25 L30e-like Eukaryotic large subunit ribosomal RNA compare
3LWR_C_D 7O7Y_BG_B5,B8 0.53 0.74 1.47 0.35 L30e-like compare
1YHQ_F_0 7O7Y_BG_B5,B8 0.59 0.94 2.25 0.24 L30e-like compare
6Q8U_C_A,B 7O7Y_BG_B5,B8 0.60 0.8 1.18 0.3 L30e-like compare
4BW0_B_A 7O7Y_BG_B5,B8 0.56 0.87 1.17 0.3 L30e-like compare
1VQ8_F_0 7O7Y_BG_B5,B8 0.59 0.94 2.24 0.24 L30e-like compare
7O7Y_BG_B5,B8 7OZQ_A_H 0.65 0.83 1.34 0.36 L30e-like compare
2HVY_D_E 7O7Y_BG_B5,B8 0.55 0.71 1.77 0.4 L30e-like compare
3HAX_D_E 7O7Y_BG_B5,B8 0.54 0.76 1.46 0.39 L30e-like compare
6AZ3_G_1,7 7O7Y_BG_B5,B8 0.69 0.93 1.08 0.38 L30e-like 5.8S ribosomal RNA & Eukaryotic large subunit ribosomal RNA compare