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All interfaces > All interologs > Interface groups > group139 > 7O7Y_Bc_B5

Interface analysis

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

7O7Y_Bc
7O7Y_B5
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
Bc:29 [LEU] B5:2516 [G] 3.29 43.59
Bc:29 [LEU] B5:2518 [G] 3.3 B5:2502 [A] base:BB 43.59
Bc:30 [GLY] B5:2516 [G] 3.28 99.0
Bc:30 [GLY] B5:2517 [A] 3.43 99.0
Bc:30 [GLY] B5:2518 [G] 3.08 B5:2502 [A] 99.0
Bc:31 [TYR] B5:2516 [G] 4.02 29.71
Bc:31 [TYR] B5:2517 [A] 2.69 29.71
Bc:31 [TYR] B5:2518 [G] 3.41 B5:2502 [A] 29.71
Bc:32 [LYS] B5:2499 [U] 4.57 B5:2521 [A] 59.23
Bc:32 [LYS] B5:2500 [G] 2.53 B5:2520 [G] base:SC 59.23
Bc:32 [LYS] B5:2501 [G] 2.95 B5:2519 [A] base:SC 59.23
Bc:32 [LYS] B5:2518 [G] 3.04 B5:2502 [A] base:BB 59.23
Bc:33 [GLN] B5:2501 [G] 3.32 B5:2519 [A] 57.04
Bc:33 [GLN] B5:2516 [G] 4.73 57.04
Bc:33 [GLN] B5:2518 [G] 2.76 B5:2502 [A] base:BB, base:SC, base:SC 57.04
Bc:34 [SER] B5:2518 [G] 4.65 B5:2502 [A] 75.0
Bc:36 [LYS] B5:2499 [U] 4.58 B5:2521 [A] 72.0
Bc:36 [LYS] B5:2500 [G] 2.69 B5:2520 [G] 72.0
Bc:51 [ASN] B5:2517 [A] 2.88 base:BB 90.64
Bc:52 [CYS] B5:2517 [A] 4.34 44.69
Bc:53 [PRO] B5:2517 [A] 3.58 84.4
Bc:54 [ALA] B5:3848 [U] 3.19 12.94
Bc:54 [ALA] B5:3849 [G] 4.16 12.94
Bc:55 [LEU] B5:3848 [U] 3.59 22.68
Bc:56 [ARG] B5:2517 [A] 2.84 sugar:SC 35.2
Bc:57 [LYS] B5:3847 [C] 2.82 base:SC 46.79
Bc:58 [SER] B5:3847 [C] 3.88 25.91
Bc:58 [SER] B5:3848 [U] 3.38 base:SC 25.91
Bc:61 [GLU] B5:3847 [C] 4.29 38.12
Bc:78 [ASN] B5:2517 [A] 3.55 79.09
Bc:88 [TYR] B5:2503 [A] 3.72 69.84
Bc:89 [TYR] B5:2503 [A] 3.64 79.12
Bc:89 [TYR] B5:2516 [G] 3.32 base/AA stacks 79.12
Bc:90 [ARG] B5:2515 [C] 4.95 B5:2505 [G] 54.22
Bc:90 [ARG] B5:2516 [G] 3.16 sugar:BB 54.22
Bc:90 [ARG] B5:2517 [A] 3.96 54.22
Bc:91 [VAL] B5:2516 [G] 3.53 85.43
Bc:91 [VAL] B5:2517 [A] 3.77 85.43
Bc:92 [CYS] B5:2516 [G] 4.65 83.46
Bc:92 [CYS] B5:2517 [A] 2.79 83.46
Bc:93 [THR] B5:2517 [A] 4.03 61.37

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group139 7O7Y_Bc_B5 Bc: El30, Oryctolagus cuniculus (natural) B5: 28s rRNA, Oryctolagus cuniculus (natural) G1TDL2 L30e-like Eukaryotic large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 8

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6AZ3_d_3 7O7Y_Bc_B5 0.92 0.92 0.7 0.5 L30e-like compare
7O7Y_Bc_B5 7OZQ_A_H 0.74 0.68 1.59 0.12 L30e-like compare
5XTM_A_B 7O7Y_Bc_B5 0.79 0.62 1.62 0.14 L30e-like compare
2HVY_D_E 7O7Y_Bc_B5 0.79 0.65 1.7 0.15 L30e-like compare
3HAX_D_E 7O7Y_Bc_B5 0.76 0.63 1.73 0.13 L30e-like compare
3LWR_C_D 7O7Y_Bc_B5 0.79 0.64 1.75 0.13 L30e-like compare
6Q8U_C_A,B 7O7Y_Bc_B5 0.78 0.71 1.79 0.15 L30e-like compare
4BW0_B_A 7O7Y_Bc_B5 0.76 0.74 1.81 0.15 L30e-like compare