RNAprotDB

Contacts -

4Y4O_1T	4Y4O_1a	Distance	Base Pair	Hbond nuc:res	Residue conservation
1T:36 [GLU]	1a:345 [C]	4.91			80.5
1T:36 [GLU]	1a:346 [G]	2.73	1a:343 [U]		80.5
1T:37 [GLY]	1a:345 [C]	4.71			56.9
1T:37 [GLY]	1a:346 [G]	4.86	1a:343 [U]		56.9
1T:39 [ARG]	1a:345 [C]	3.08			76.0
1T:39 [ARG]	1a:346 [G]	3.52	1a:343 [U]	sugar:SC	76.0
1T:41 [ARG]	1a:346 [G]	3.8	1a:343 [U]		88.4
1T:41 [ARG]	1a:347 [G]	4.84	1a:342 [C]		88.4
1T:106 [SER]	1a:1431 [C]	3.37	1a:1469 [G]		9.6
1T:106 [SER]	1a:1432 [G]	3.64	1a:1468 [A]		9.6
1T:107 [ASP]	1a:1431 [C]	4.81	1a:1469 [G]		51.6
1T:107 [ASP]	1a:1432 [G]	3.65	1a:1468 [A]		51.6
1T:108 [ARG]	1a:1432 [G]	3.22	1a:1468 [A]		64.8
1T:108 [ARG]	1a:1464 [G]	3.92	1a:1437 [C]		64.8
1T:109 [GLU]	1a:1431 [C]	4.0	1a:1469 [G]		25.5
1T:111 [ARG]	1a:1463 [C]	2.88	1a:1438 [G]		59.7
1T:111 [ARG]	1a:1464 [G]	2.55	1a:1437 [C]		59.7
1T:118 [ARG]	1a:1442A [G]	3.0			14.0
1T:118 [ARG]	1a:1442B [A]	3.28			14.0
1T:119 [LYS]	1a:1442A [G]	3.3			42.1
1T:122 [ASP]	1a:1442A [G]	3.11			55.0
1T:122 [ASP]	1a:1442B [A]	3.75			55.0
1T:125 [ARG]	1a:1442B [A]	3.3			65.8
1T:125 [ARG]	1a:1443 [G]	4.09	1a:1459 [C]		65.8

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

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