Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
View
Focus on
InterfaceRNA
Protein
All
Show chains
Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
| 7K00_o
|
7K00_A
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
|---|---|---|---|---|---|---|
| o:39 [ARG] | A:345 [C] | 3.74 | 88.68 | |||
| o:39 [ARG] | A:346 [G] | 2.24 | A:343 [U] | 88.68 | ||
| o:41 [GLN] | A:345 [C] | 4.71 | 85.67 | |||
| o:41 [GLN] | A:346 [G] | 2.81 | A:343 [U] | 85.67 | ||
| o:104 [THR] | A:1432 [G] | 3.68 | A:1468 [A] | 35.56 | ||
| o:105 [GLY] | A:1432 [G] | 3.94 | A:1468 [A] | 41.55 | ||
| o:106 [LYS] | A:1432 [G] | 2.98 | A:1468 [A] | 66.03 | ||
| o:106 [LYS] | A:1433 [A] | 3.53 | A:1467 [C] | 66.03 | ||
| o:106 [LYS] | A:1464 [U] | 4.75 | A:1437 [A] | 66.03 | ||
| o:107 [ALA] | A:1432 [G] | 4.3 | A:1468 [A] | 18.2 | ||
| o:109 [ARG] | A:1462 [C] | 4.96 | A:1439 [G] | 48.38 | ||
| o:109 [ARG] | A:1463 [U] | 2.84 | A:1438 [G] | 48.38 | ||
| o:109 [ARG] | A:1464 [U] | 2.66 | A:1437 [A] | 48.38 | ||
| o:112 [GLU] | A:1461 [G] | 4.81 | A:1440 [U] | 23.4 | ||
| o:114 [LEU] | A:1441 [A] | 3.27 | 4.44 | |||
| o:114 [LEU] | A:1442 [G] | 3.33 | A:1460 [C] | 4.44 |
Export the table of contacts
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
| Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
|---|---|---|---|---|---|---|---|
| group14 | 7K00_o_A | o: 50s ribosomal protein l19, Escherichia coli (natural) A: 16s rRNA, Escherichia coli (natural) | P0A7K6 | SH3 | Bacterial small subunit ribosomal RNA | ✔ |
|
Interologs
Total number of interologs for this interface: 1
| Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
|---|---|---|---|---|---|---|---|---|
| 4Y4O_1T_1a | 7K00_o_A | 0.39 | 0.97 | 2.29 | 0.22 | SH3 | Bacterial small subunit ribosomal RNA | compare |