RNAprotDB

All interfaces > All interologs > Interface groups > group140 > 4KRF_A_R vs 6OZP_B_C,D

Interface analysis


mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Structure
Structure (with hetatm)
Chain
Chainbow

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show interface as licorice

Common contacts -

4KRF_A
4KRF_R
6OZP_B
6OZP_C,D
Conserved?
A:802 [TYR] R:4 [G] B:237 [ARG] C:17 [A] ✔
A:796 [SER] R:4 [G] B:231 [ARG] C:17 [A] ✔
A:796 [SER] R:5 [G] B:231 [ARG] C:18 [U] ✔
A:796 [SER] R:6 [U] B:231 [ARG] C:19 [G] ✔
A:708 [ARG] R:8 [G] B:156 [LYS] C:22 [U] ✔
A:708 [ARG] R:9 [U] B:156 [LYS] C:23 [U] ✔
A:795 [VAL] R:4 [G] B:230 [PHE] C:17 [A] ✔
A:795 [VAL] R:5 [G] B:230 [PHE] C:18 [U] ✔
A:758 [SER] R:5 [G] B:204 [THR] C:18 [U] ✔
A:758 [SER] R:6 [U] B:204 [THR] C:19 [G] ✔
A:754 [ILE] R:5 [G] B:203 [SER] C:18 [U] ✔
A:759 [ARG] R:6 [U] B:205 [LYS] C:19 [G] ✔
A:759 [ARG] R:7 [A] B:205 [LYS] C:20 [C] ✔
A:753 [GLY] R:5 [G] B:202 [HIS] C:18 [U] ✔
A:802 [TYR] R:5 [G] B:237 [ARG] C:18 [U] ❌ 6OZP_B_C,D
A:707 [LYS] R:5 [G] B:155 [LYS] C:18 [U] ❌ 6OZP_B_C,D
A:707 [LYS] R:6 [U] B:155 [LYS] C:19 [G] ❌ 6OZP_B_C,D
A:754 [ILE] R:4 [G] B:203 [SER] C:17 [A] ❌ 6OZP_B_C,D
A:759 [ARG] R:8 [G] B:205 [LYS] C:22 [U] ❌ 6OZP_B_C,D
A:754 [ILE] R:6 [U] B:203 [SER] C:19 [G] ❌ 4KRF_A_R
A:802 [TYR] R:3 [A] B:237 [ARG] C:16 [C] ❌ 4KRF_A_R
A:813 [TYR] R:3 [A] B:248 [ARG] C:16 [C] ❌ 4KRF_A_R
A:710 [HIS] R:8 [G] B:165 [ASN] C:22 [U] ❌ 6OZP_B:165 no longer at interface
A:797 [ILE] R:5 [G] B:232 [ILE] C:18 [U] ❌ 6OZP_B:232 no longer at interface
A:751 [HIS] R:5 [G] B:200 [HIS] C:18 [U] ❌ 6OZP_B:200 no longer at interface
A:751 [HIS] R:6 [U] B:200 [HIS] C:19 [G] ❌ 6OZP_B:200 no longer at interface
A:712 [ARG] R:7 [A] B:170 [LYS] C:20 [C] ❌ 6OZP_B:170 no longer at interface
A:712 [ARG] R:8 [G] B:170 [LYS] C:22 [U] ❌ 6OZP_B:170 no longer at interface
A:752 [ALA] R:5 [G] B:201 [ASP] C:18 [U] ❌ 6OZP_B:201 no longer at interface
A:806 [LEU] R:3 [A] B:241 [ILE] C:16 [C] ❌ 4KRF_A:806 no longer at interface
A:806 [LEU] R:4 [G] B:241 [ILE] C:17 [A] ❌ 4KRF_A:806 no longer at interface
A:809 [PHE] R:3 [A] B:244 [ARG] C:16 [C] ❌ 4KRF_A:809 no longer at interface

logo_download Export the table of contacts

Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribonuclease H-like 0.62 2.61 0.05 0.65 0.26 0.5 0.58 0.53 0.39 0.20 0.56


Other pairs involving 4KRF_A_R or 6OZP_B_C,D

Total number of entries: 31

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4OLA_A_B 6OZP_B_C,D 0.50 0.6 2.63 0.05 Ribonuclease H-like compare
6OZP_B_C,D 6OZS_A_C,D 0.96 0.94 0.45 0.73 Ribonuclease H-like compare
6OZP_B_C,D 6OZS_B_C,D 0.97 1.0 0.24 1.0 Ribonuclease H-like compare
6MFN_A_C,E 6OZP_B_C,D 0.47 0.63 2.56 0.05 Ribonuclease H-like compare
4KXT_A_B 6OZP_B_C,D 0.48 0.61 2.62 0.05 Ribonuclease H-like compare
4KRE_A_R 6OZP_B_C,D 0.54 0.62 2.51 0.05 Ribonuclease H-like compare
4KRE_A_R 4KRF_A_R 0.99 1.0 0.36 0.18 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
5JS1_A_B 6OZP_B_C,D 0.50 0.61 2.67 0.05 Ribonuclease H-like compare
6OON_A_B 6OZP_B_C,D 0.49 0.61 2.62 0.05 Ribonuclease H-like compare
4Z4D_A_B,D 6OZP_B_C,D 0.48 0.63 2.69 0.1 Ribonuclease H-like compare
4W5O_A_B,D 6OZP_B_C,D 0.48 0.63 2.71 0.1 Ribonuclease H-like compare
4KRF_A_R 6OON_A_B 0.97 0.98 0.92 0.33 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
4KRF_A_R 6OZP_B_C,D 0.53 0.62 2.61 0.05 Ribonuclease H-like compare
4KRF_A_R 6D92_A_C 0.62 0.71 4.01 0.17 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
4KRF_A_R 4OLA_A_B 0.98 0.98 1.1 0.3 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
4KRF_A_R 6CBD_A_B,C 0.86 0.93 2.39 0.17 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
4KRF_A_R 4Z4D_A_B,D 0.88 0.93 2.36 0.25 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
4KRF_A_R 6MFN_A_C,E 0.87 0.86 1.85 0.08 Ribonuclease H-like & Argonaute, N-terminal domain & Middle domain in Argonaute homologs compare
4KRF_A_R 6OZS_B_C,D 0.55 0.62 2.59 0.09 Ribonuclease H-like compare
4KRF_A_R 4W5O_A_B,D 0.86 0.92 2.36 0.25 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
4KRF_A_R 5I4A_A_B 0.59 0.77 2.79 0.03 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
4KRF_A_R 4KXT_A_B 0.95 0.97 1.54 0.25 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 compare
4KRF_A_R 4W5T_A_B,D 0.82 0.93 2.41 0.25 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
4KRF_A_R 6OZP_A_C,D 0.48 0.62 2.57 0.08 Ribonuclease H-like compare
4KRF_A_R 5AWH_A_C 0.48 0.71 3.98 0.14 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
4KRF_A_R 5JS1_A_B 0.98 0.98 1.05 0.4 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
4KRF_A_R 6OZS_A_C,D 0.49 0.62 2.57 0.0 Ribonuclease H-like compare
4W5T_A_B,D 6OZP_B_C,D 0.37 0.63 2.75 0.05 Ribonuclease H-like compare
4F3T_A_R 6OZP_B_C,D 0.53 0.61 2.72 0.05 Ribonuclease H-like compare
4F3T_A_R 4KRF_A_R 0.97 0.98 1.02 0.42 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
6CBD_A_B,C 6OZP_B_C,D 0.48 0.63 2.7 0.1 Ribonuclease H-like compare