RNAprotDB

All interfaces > All interologs > Interface groups > group140 > 4OLA_A_B vs 4Z4D_A_B,D

Interface analysis


mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Structure
Structure (with hetatm)
Chain
Chainbow

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show interface as licorice

Common contacts -

4OLA_A
4OLA_B
4Z4D_A
4Z4D_B,D
Conserved?
A:364 [MET] B:7 [A] A:364 [MET] B:7 [U] ✔
A:757 [GLN] B:5 [A] A:757 [GLN] B:5 [C] ✔
A:757 [GLN] B:6 [A] A:757 [GLN] B:6 [A] ✔
A:756 [ILE] B:4 [A] A:756 [ILE] B:4 [A] ✔
A:756 [ILE] B:5 [A] A:756 [ILE] B:5 [C] ✔
A:547 [VAL] B:1 [A] A:547 [VAL] B:1 [U] ✔
A:547 [VAL] B:2 [A] A:547 [VAL] B:2 [U] ✔
A:709 [LYS] B:6 [A] A:709 [LYS] B:6 [A] ✔
A:544 [THR] B:1 [A] A:544 [THR] B:1 [U] ✔
A:859 [ALA] B:1 [A] A:859 [ALA] B:1 [U] ✔
A:859 [ALA] B:3 [A] A:859 [ALA] B:3 [C] ✔
A:815 [TYR] B:1 [A] A:815 [TYR] B:1 [U] ✔
A:812 [ARG] B:1 [A] A:812 [ARG] B:1 [U] ✔
A:804 [TYR] B:4 [A] A:804 [TYR] B:4 [A] ✔
A:804 [TYR] B:5 [A] A:804 [TYR] B:5 [C] ✔
A:799 [ILE] B:5 [A] A:799 [ILE] B:5 [C] ✔
A:529 [TYR] B:1 [A] A:529 [TYR] B:1 [U] ✔
A:526 [THR] B:1 [A] A:526 [THR] B:1 [U] ✔
A:790 [TYR] B:3 [A] A:790 [TYR] B:3 [C] ✔
A:790 [TYR] B:4 [A] A:790 [TYR] B:4 [A] ✔
A:566 [LYS] B:1 [A] A:566 [LYS] B:1 [U] ✔
A:566 [LYS] B:2 [A] A:566 [LYS] B:2 [U] ✔
A:566 [LYS] B:3 [A] A:566 [LYS] B:3 [C] ✔
A:570 [LYS] B:1 [A] A:570 [LYS] B:1 [U] ✔
A:797 [VAL] B:4 [A] A:797 [VAL] B:4 [A] ✔
A:797 [VAL] B:5 [A] A:797 [VAL] B:5 [C] ✔
A:753 [HIS] B:5 [A] A:753 [HIS] B:5 [C] ✔
A:753 [HIS] B:6 [A] A:753 [HIS] B:6 [A] ✔
A:548 [GLN] B:1 [A] A:548 [GLN] B:1 [U] ✔
A:548 [GLN] B:2 [A] A:548 [GLN] B:2 [U] ✔
A:375 [ARG] B:7 [A] A:375 [ARG] B:7 [U] ✔
A:525 [LYS] B:1 [A] A:525 [LYS] B:1 [U] ✔
A:522 [LEU] B:1 [A] A:522 [LEU] B:1 [U] ✔
A:368 [THR] B:7 [A] A:368 [THR] B:7 [U] ✔
A:760 [SER] B:5 [A] A:760 [SER] B:5 [C] ✔
A:760 [SER] B:6 [A] A:760 [SER] B:6 [A] ✔
A:792 [ARG] B:3 [A] A:792 [ARG] B:3 [C] ✔
A:792 [ARG] B:4 [A] A:792 [ARG] B:4 [A] ✔
A:220 [SER] B:8 [A] A:220 [SER] B:8 [U] ✔
A:563 [LEU] B:2 [A] A:563 [LEU] B:2 [U] ✔
A:798 [SER] B:4 [A] A:798 [SER] B:4 [A] ✔
A:798 [SER] B:5 [A] A:798 [SER] B:5 [C] ✔
A:798 [SER] B:6 [A] A:798 [SER] B:6 [A] ✔
A:761 [ARG] B:6 [A] A:761 [ARG] B:6 [A] ✔
A:761 [ARG] B:7 [A] A:761 [ARG] B:7 [U] ✔
A:761 [ARG] B:8 [A] A:761 [ARG] B:8 [U] ✔
A:755 [GLY] B:5 [A] A:755 [GLY] B:5 [C] ✔
A:754 [ALA] B:5 [A] A:754 [ALA] B:5 [C] ✔
A:365 [ILE] B:6 [A] A:365 [ILE] B:6 [A] ✔
A:365 [ILE] B:7 [A] A:365 [ILE] B:7 [U] ✔
A:221 [ALA] B:8 [A] A:221 [ALA] B:8 [U] ✔
A:758 [GLY] B:6 [A] A:758 [GLY] B:6 [A] ✔
A:533 [LYS] B:1 [A] A:533 [LYS] B:1 [U] ✔
A:558 [GLN] B:2 [A] A:558 [GLN] B:2 [U] ✔
A:759 [THR] B:6 [A] A:759 [THR] B:6 [A] ✔
A:759 [THR] B:7 [A] A:759 [THR] B:7 [U] ✔
A:795 [ARG] B:4 [A] A:795 [ARG] B:4 [A] ✔
A:551 [ASN] B:1 [A] A:551 [ASN] B:1 [U] ✔
A:551 [ASN] B:2 [A] A:551 [ASN] B:2 [U] ✔
A:546 [CYS] B:1 [A] A:546 [CYS] B:1 [U] ✔
A:546 [CYS] B:2 [A] A:546 [CYS] B:2 [U] ✔
A:710 [ARG] B:8 [A] A:710 [ARG] B:8 [U] ✔
A:714 [ARG] B:7 [A] A:714 [ARG] B:7 [U] ✔
A:562 [ASN] B:2 [A] A:562 [ASN] B:2 [U] ✔
A:562 [ASN] B:3 [A] A:562 [ASN] B:3 [C] ✔
A:524 [GLY] B:1 [A] A:524 [GLY] B:1 [U] ✔
A:559 [THR] B:2 [A] A:559 [THR] B:2 [U] ✔
A:793 [CYS] B:3 [A] A:793 [CYS] B:3 [C] ✔
A:793 [CYS] B:4 [A] A:793 [CYS] B:4 [A] ✔
A:545 [GLN] B:1 [A] A:545 [GLN] B:1 [U] ✔
A:545 [GLN] B:2 [A] A:545 [GLN] B:2 [U] ✔
A:364 [MET] B:8 [A] A:364 [MET] B:8 [U] ❌ 4Z4D_A_B,D
A:220 [SER] B:7 [A] A:220 [SER] B:7 [U] ❌ 4Z4D_A_B,D
A:361 [THR] B:7 [A] A:361 [THR] B:7 [U] ❌ 4Z4D_A_B,D
A:221 [ALA] B:7 [A] A:221 [ALA] B:7 [U] ❌ 4Z4D_A_B,D
A:351 [ARG] B:8 [A] A:351 [ARG] B:8 [U] ❌ 4Z4D_A_B,D
A:714 [ARG] B:6 [A] A:714 [ARG] B:6 [A] ❌ 4Z4D_A_B,D
A:714 [ARG] B:8 [A] A:714 [ARG] B:8 [U] ❌ 4Z4D_A_B,D
A:709 [LYS] B:5 [A] A:709 [LYS] B:5 [C] ❌ 4OLA_A_B
A:369 [ALA] B:6 [A] A:369 [ALA] B:6 [A] ❌ 4Z4D_A:369 no longer at interface
A:219 [VAL] B:8 [A] A:219 [VAL] B:8 [U] ❌ 4Z4D_A:219 no longer at interface
A:356 [LEU] B:7 [A] A:356 [LEU] B:7 [U] ❌ 4Z4D_A:356 no longer at interface
A:712 [HIS] B:8 [A] A:712 [HIS] B:8 [U] ❌ 4Z4D_A:712 no longer at interface
A:222 [THR] B:8 [A] A:222 [THR] B:8 [U] ❌ 4Z4D_A:222 no longer at interface

logo_download Export the table of contacts

Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs 0.93 3.04 0.20 0.93 0.47 0.87 0.8 0.95 0.86 0.64 0.38


Other pairs involving 4OLA_A_B or 4Z4D_A_B,D

Total number of entries: 35

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4OLA_A_B 6OZS_B_C,D 0.51 0.6 2.64 0.09 Ribonuclease H-like compare
4OLA_A_B 6OZP_B_C,D 0.50 0.6 2.63 0.05 Ribonuclease H-like compare
4OLA_A_B 6MFN_A_C,E 0.88 0.86 1.81 0.2 Ribonuclease H-like & Argonaute, N-terminal domain & Middle domain in Argonaute homologs compare
4OLA_A_B 4W5O_A_B,D 0.92 0.92 3.08 0.2 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
4OLA_A_B 6OZS_A_C,D 0.57 0.6 2.63 0.1 Ribonuclease H-like compare
4OLA_A_B 5AWH_A_C 0.63 0.71 3.34 0.16 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
4OLA_A_B 6OZP_A_C,D 0.58 0.6 2.64 0.1 Ribonuclease H-like compare
4OLA_A_B 5I4A_A_B 0.61 0.77 3.22 0.03 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
4OLA_A_B 4W5T_A_B,D 0.91 0.93 3.22 0.2 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
4OLA_A_B 4Z4D_A_B,D 0.95 0.93 3.04 0.2 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
4OLA_A_B 6CBD_A_B,C 0.95 0.91 3.17 0.2 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
4OLA_A_B 6OON_A_B 0.99 0.95 1.78 0.9 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
4OLA_A_B 6D92_A_C 0.61 0.7 3.32 0.1 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
4OLA_A_B 5JS1_A_B 0.99 1.0 0.31 0.2 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
4KXT_A_B 4Z4D_A_B,D 0.87 0.91 2.97 0.17 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 compare
4KXT_A_B 4OLA_A_B 0.98 0.98 0.92 0.9 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 compare
4KRE_A_R 4OLA_A_B 1.00 0.97 1.39 0.5 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
4KRE_A_R 4Z4D_A_B,D 0.86 0.94 2.2 0.09 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
4Z4D_A_B,D 6MFN_A_C,E 0.85 0.92 1.69 0.76 Ribonuclease H-like & Argonaute, N-terminal domain & Middle domain in Argonaute homologs compare
4Z4D_A_B,D 5AWH_A_C 0.59 0.71 4.13 0.17 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
4Z4D_A_B,D 5I4A_A_B 0.39 0.78 3.14 0.03 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
4Z4D_A_B,D 6OZS_B_C,D 0.49 0.63 2.83 0.14 Ribonuclease H-like compare
4Z4D_A_B,D 6D92_A_C 0.59 0.71 4.22 0.11 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
4Z4D_A_B,D 6OON_A_B 0.90 0.96 1.83 0.33 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
4Z4D_A_B,D 6CBD_A_B,C 0.95 1.0 0.3 0.93 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
4Z4D_A_B,D 6OZP_A_C,D 0.56 0.61 2.76 0.15 Ribonuclease H-like compare
4Z4D_A_B,D 5JS1_A_B 0.90 0.92 3.21 0.4 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
4Z4D_A_B,D 6OZS_A_C,D 0.58 0.6 2.77 0.15 Ribonuclease H-like compare
4Z4D_A_B,D 6OZP_B_C,D 0.48 0.63 2.69 0.1 Ribonuclease H-like compare
4W5O_A_B,D 4Z4D_A_B,D 0.96 1.0 0.12 0.96 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
4KRF_A_R 4OLA_A_B 0.98 0.98 1.1 0.3 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
4KRF_A_R 4Z4D_A_B,D 0.88 0.93 2.36 0.25 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
4W5T_A_B,D 4Z4D_A_B,D 0.91 0.99 0.27 0.88 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
4F3T_A_R 4OLA_A_B 0.99 0.99 0.3 0.3 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
4F3T_A_R 4Z4D_A_B,D 0.70 0.92 3.19 0.14 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare