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All interfaces > All interologs > Interface groups > group140 > 4W5O_A_B,D vs 6CBD_A_B,C

Interface analysis


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Common contacts -

4W5O_A
4W5O_B,D
6CBD_A
6CBD_B,C
Conserved?
A:757 [GLN] B:5 [C] A:757 [GLN] B:5 [C] ✔
A:757 [GLN] B:6 [A] A:757 [GLN] B:6 [A] ✔
A:757 [GLN] D:26 [G] A:757 [GLN] C:26 [G] ✔
A:757 [GLN] D:27 [U] A:757 [GLN] C:27 [U] ✔
A:709 [LYS] B:5 [C] A:709 [LYS] B:5 [C] ✔
A:709 [LYS] B:6 [A] A:709 [LYS] B:6 [A] ✔
A:635 [ARG] B:10 [C] A:635 [ARG] B:10 [C] ✔
A:635 [ARG] B:11 [C] A:635 [ARG] B:11 [C] ✔
A:812 [ARG] B:1 [U] A:812 [ARG] B:1 [U] ✔
A:790 [TYR] B:3 [C] A:790 [TYR] B:3 [C] ✔
A:790 [TYR] B:4 [A] A:790 [TYR] B:4 [A] ✔
A:566 [LYS] B:1 [U] A:566 [LYS] B:1 [U] ✔
A:566 [LYS] B:2 [U] A:566 [LYS] B:2 [U] ✔
A:566 [LYS] B:3 [C] A:566 [LYS] B:3 [C] ✔
A:179 [ARG] B:12 [C] A:179 [ARG] B:12 [C] ✔
A:179 [ARG] B:13 [A] A:179 [ARG] B:13 [A] ✔
A:797 [VAL] B:4 [A] A:797 [VAL] B:4 [A] ✔
A:797 [VAL] B:5 [C] A:797 [VAL] B:5 [C] ✔
A:435 [TRP] D:30 [A] A:435 [TRP] C:30 [A] ✔
A:755 [GLY] B:5 [C] A:755 [GLY] B:5 [C] ✔
A:754 [ALA] B:5 [C] A:754 [ALA] B:5 [C] ✔
A:438 [ARG] D:30 [A] A:438 [ARG] C:30 [A] ✔
A:438 [ARG] D:31 [A] A:438 [ARG] C:31 [A] ✔
A:557 [PRO] D:30 [A] A:557 [PRO] C:30 [A] ✔
A:221 [ALA] B:8 [U] A:221 [ALA] B:8 [U] ✔
A:339 [LEU] B:21 [U] A:339 [LEU] B:21 [U] ✔
A:670 [GLY] B:11 [C] A:670 [GLY] B:11 [C] ✔
A:672 [SER] B:11 [C] A:672 [SER] B:11 [C] ✔
A:672 [SER] B:12 [C] A:672 [SER] B:12 [C] ✔
A:674 [GLY] B:12 [C] A:674 [GLY] B:12 [C] ✔
A:67 [PRO] B:16 [U] A:67 [PRO] B:16 [U] ✔
A:67 [PRO] B:17 [C] A:67 [PRO] B:17 [C] ✔
A:351 [ARG] B:9 [G] A:351 [ARG] B:9 [G] ✔
A:710 [ARG] B:8 [U] A:710 [ARG] B:8 [U] ✔
A:710 [ARG] B:9 [G] A:710 [ARG] B:9 [G] ✔
A:710 [ARG] B:10 [C] A:710 [ARG] B:10 [C] ✔
A:710 [ARG] D:22 [C] A:710 [ARG] C:22 [C] ✔
A:562 [ASN] B:2 [U] A:562 [ASN] B:2 [U] ✔
A:562 [ASN] B:3 [C] A:562 [ASN] B:3 [C] ✔
A:562 [ASN] D:29 [A] A:562 [ASN] C:29 [A] ✔
A:637 [GLU] B:11 [C] A:637 [GLU] B:11 [C] ✔
A:545 [GLN] B:1 [U] A:545 [GLN] B:1 [U] ✔
A:545 [GLN] B:2 [U] A:545 [GLN] B:2 [U] ✔
A:311 [TYR] B:21 [U] A:311 [TYR] B:21 [U] ✔
A:793 [CYS] B:3 [C] A:793 [CYS] B:3 [C] ✔
A:793 [CYS] B:4 [A] A:793 [CYS] B:4 [A] ✔
A:726 [LYS] D:27 [U] A:726 [LYS] C:27 [U] ✔
A:726 [LYS] D:28 [G] A:726 [LYS] C:28 [G] ✔
A:294 [PHE] B:21 [U] A:294 [PHE] B:21 [U] ✔
A:598 [VAL] B:10 [C] A:598 [VAL] B:10 [C] ✔
A:526 [THR] B:1 [U] A:526 [THR] B:1 [U] ✔
A:357 [THR] D:24 [A] A:357 [THR] C:24 [A] ✔
A:601 [PRO] B:10 [C] A:601 [PRO] B:10 [C] ✔
A:601 [PRO] B:11 [C] A:601 [PRO] B:11 [C] ✔
A:97 [ARG] B:13 [A] A:97 [ARG] B:13 [A] ✔
A:97 [ARG] B:14 [A] A:97 [ARG] B:14 [A] ✔
A:97 [ARG] B:15 [G] A:97 [ARG] B:15 [G] ✔
A:375 [ARG] B:7 [U] A:375 [ARG] B:7 [U] ✔
A:753 [HIS] B:5 [C] A:753 [HIS] B:5 [C] ✔
A:753 [HIS] B:6 [A] A:753 [HIS] B:6 [A] ✔
A:522 [LEU] B:1 [U] A:522 [LEU] B:1 [U] ✔
A:563 [LEU] B:2 [U] A:563 [LEU] B:2 [U] ✔
A:798 [SER] B:4 [A] A:798 [SER] B:4 [A] ✔
A:798 [SER] B:5 [C] A:798 [SER] B:5 [C] ✔
A:798 [SER] B:6 [A] A:798 [SER] B:6 [A] ✔
A:178 [GLY] B:13 [A] A:178 [GLY] B:13 [A] ✔
A:178 [GLY] B:14 [A] A:178 [GLY] B:14 [A] ✔
A:70 [VAL] B:17 [C] A:70 [VAL] B:17 [C] ✔
A:558 [GLN] B:2 [U] A:558 [GLN] B:2 [U] ✔
A:558 [GLN] D:29 [A] A:558 [GLN] C:29 [A] ✔
A:558 [GLN] D:30 [A] A:558 [GLN] C:30 [A] ✔
A:561 [SER] D:30 [A] A:561 [SER] C:30 [A] ✔
A:295 [PRO] B:21 [U] A:295 [PRO] B:21 [U] ✔
A:600 [HIS] B:10 [C] A:600 [HIS] B:10 [C] ✔
A:600 [HIS] B:11 [C] A:600 [HIS] B:11 [C] ✔
A:436 [ASP] D:30 [A] A:436 [ASP] C:30 [A] ✔
A:68 [ARG] B:13 [A] A:68 [ARG] B:13 [A] ✔
A:68 [ARG] B:14 [A] A:68 [ARG] B:14 [A] ✔
A:68 [ARG] B:15 [G] A:68 [ARG] B:15 [G] ✔
A:68 [ARG] B:16 [U] A:68 [ARG] B:16 [U] ✔
A:714 [ARG] B:7 [U] A:714 [ARG] B:7 [U] ✔
A:559 [THR] B:2 [U] A:559 [THR] B:2 [U] ✔
A:559 [THR] D:29 [A] A:559 [THR] C:29 [A] ✔
A:66 [CYS] B:17 [C] A:66 [CYS] B:17 [C] ✔
A:804 [TYR] B:4 [A] A:804 [TYR] B:4 [A] ✔
A:804 [TYR] B:5 [C] A:804 [TYR] B:5 [C] ✔
A:815 [TYR] B:1 [U] A:815 [TYR] B:1 [U] ✔
A:815 [TYR] D:22 [C] A:815 [TYR] C:22 [C] ✔
A:815 [TYR] D:23 [A] A:815 [TYR] C:23 [A] ✔
A:756 [ILE] B:4 [A] A:756 [ILE] B:4 [A] ✔
A:756 [ILE] B:5 [C] A:756 [ILE] B:5 [C] ✔
A:756 [ILE] D:27 [U] A:756 [ILE] C:27 [U] ✔
A:756 [ILE] D:28 [G] A:756 [ILE] C:28 [G] ✔
A:547 [VAL] B:1 [U] A:547 [VAL] B:1 [U] ✔
A:547 [VAL] B:2 [U] A:547 [VAL] B:2 [U] ✔
A:434 [VAL] D:30 [A] A:434 [VAL] C:30 [A] ✔
A:176 [PRO] B:14 [A] A:176 [PRO] B:14 [A] ✔
A:176 [PRO] B:15 [G] A:176 [PRO] B:15 [G] ✔
A:859 [ALA] B:1 [U] A:859 [ALA] B:1 [U] ✔
A:859 [ALA] B:3 [C] A:859 [ALA] B:3 [C] ✔
A:799 [ILE] B:5 [C] A:799 [ILE] B:5 [C] ✔
A:529 [TYR] B:1 [U] A:529 [TYR] B:1 [U] ✔
A:65 [LYS] B:16 [U] A:65 [LYS] B:16 [U] ✔
A:65 [LYS] B:17 [C] A:65 [LYS] B:17 [C] ✔
A:477 [ILE] D:30 [A] A:477 [ILE] C:30 [A] ✔
A:570 [LYS] B:1 [U] A:570 [LYS] B:1 [U] ✔
A:603 [ALA] B:9 [G] A:603 [ALA] B:9 [G] ✔
A:603 [ALA] B:10 [C] A:603 [ALA] B:10 [C] ✔
A:337 [THR] B:21 [U] A:337 [THR] B:21 [U] ✔
A:368 [THR] B:7 [U] A:368 [THR] B:7 [U] ✔
A:308 [VAL] B:21 [U] A:308 [VAL] B:21 [U] ✔
A:760 [SER] B:5 [C] A:760 [SER] B:5 [C] ✔
A:760 [SER] B:6 [A] A:760 [SER] B:6 [A] ✔
A:792 [ARG] B:3 [C] A:792 [ARG] B:3 [C] ✔
A:792 [ARG] B:4 [A] A:792 [ARG] B:4 [A] ✔
A:761 [ARG] B:6 [A] A:761 [ARG] B:6 [A] ✔
A:761 [ARG] B:7 [U] A:761 [ARG] B:7 [U] ✔
A:761 [ARG] B:8 [U] A:761 [ARG] B:8 [U] ✔
A:671 [VAL] B:11 [C] A:671 [VAL] B:11 [C] ✔
A:365 [ILE] B:6 [A] A:365 [ILE] B:6 [A] ✔
A:365 [ILE] B:7 [U] A:365 [ILE] B:7 [U] ✔
A:365 [ILE] D:25 [U] A:365 [ILE] C:25 [U] ✔
A:365 [ILE] D:26 [G] A:365 [ILE] C:26 [G] ✔
A:758 [GLY] B:6 [A] A:758 [GLY] B:6 [A] ✔
A:759 [THR] B:6 [A] A:759 [THR] B:6 [A] ✔
A:759 [THR] B:7 [U] A:759 [THR] B:7 [U] ✔
A:795 [ARG] B:4 [A] A:795 [ARG] B:4 [A] ✔
A:296 [LEU] B:21 [U] A:296 [LEU] B:21 [U] ✔
A:551 [ASN] B:2 [U] A:551 [ASN] B:2 [U] ✔
A:546 [CYS] B:1 [U] A:546 [CYS] B:1 [U] ✔
A:546 [CYS] B:2 [U] A:546 [CYS] B:2 [U] ✔
A:316 [HIS] B:21 [U] A:316 [HIS] B:21 [U] ✔
A:312 [PHE] B:21 [U] A:312 [PHE] B:21 [U] ✔
A:599 [THR] B:10 [C] A:599 [THR] B:10 [C] ✔
A:544 [THR] B:1 [U] A:544 [THR] B:1 [U] ✔
A:602 [PRO] B:9 [G] A:602 [PRO] B:9 [G] ✔
A:602 [PRO] B:10 [C] A:602 [PRO] B:10 [C] ✔
A:177 [VAL] B:14 [A] A:177 [VAL] B:14 [A] ✔
A:358 [ASP] D:24 [A] A:358 [ASP] C:24 [A] ✔
A:358 [ASP] D:25 [U] A:358 [ASP] C:25 [U] ✔
A:548 [GLN] B:1 [U] A:548 [GLN] B:1 [U] ✔
A:548 [GLN] B:2 [U] A:548 [GLN] B:2 [U] ✔
A:525 [LYS] B:1 [U] A:525 [LYS] B:1 [U] ✔
A:525 [LYS] D:23 [A] A:525 [LYS] C:23 [A] ✔
A:525 [LYS] D:24 [A] A:525 [LYS] C:24 [A] ✔
A:675 [GLN] B:11 [C] A:675 [GLN] B:11 [C] ✔
A:675 [GLN] B:12 [C] A:675 [GLN] B:12 [C] ✔
A:361 [THR] D:24 [A] A:361 [THR] C:24 [A] ✔
A:361 [THR] D:25 [U] A:361 [THR] C:25 [U] ✔
A:338 [TYR] B:21 [U] A:338 [TYR] B:21 [U] ✔
A:811 [PHE] B:10 [C] A:811 [PHE] B:10 [C] ✔
A:811 [PHE] D:22 [C] A:811 [PHE] C:22 [C] ✔
A:533 [LYS] B:1 [U] A:533 [LYS] B:1 [U] ✔
A:437 [MET] D:30 [A] A:437 [MET] C:30 [A] ✔
A:524 [GLY] B:1 [U] A:524 [GLY] B:1 [U] ✔
A:362 [SER] D:25 [U] A:362 [SER] C:25 [U] ✔
A:362 [SER] D:26 [G] A:362 [SER] C:26 [G] ✔
A:280 [ARG] B:16 [U] A:280 [ARG] B:16 [U] ✔
A:280 [ARG] B:17 [C] A:280 [ARG] B:17 [C] ✔
A:179 [ARG] B:14 [A] A:179 [ARG] B:14 [A] ❌ 6CBD_A_B,C
A:551 [ASN] B:1 [U] A:551 [ASN] B:1 [U] ❌ 4W5O_A_B,D
A:714 [ARG] B:6 [A] A:714 [ARG] B:6 [A] ❌ 4W5O_A_B,D
A:279 [TYR] B:21 [U] A:279 [TYR] B:21 [U] ❌ 6CBD_A:279 no longer at interface
A:278 [LYS] B:17 [C] A:278 [LYS] B:17 [C] ❌ 6CBD_A:278 no longer at interface
A:269 [ILE] B:21 [U] A:269 [ILE] B:21 [U] ❌ 6CBD_A:269 no longer at interface
A:266 [LYS] B:16 [U] A:266 [LYS] B:16 [U] ❌ 6CBD_A:266 no longer at interface
A:220 [SER] B:8 [U] A:220 [SER] B:8 [U] ❌ 4W5O_A:220 no longer at interface
A:364 [MET] B:7 [U] A:364 [MET] B:7 [U] ❌ 4W5O_A:364 no longer at interface
A:366 [ARG] D:26 [G] A:366 [ARG] C:26 [G] ❌ 4W5O_A:366 no longer at interface
A:366 [ARG] D:27 [U] A:366 [ARG] C:27 [U] ❌ 4W5O_A:366 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs 1.0 0.36 0.97 1.0 0.86 0.97 1.0 0.99 0.96 0.74 0.73


Other pairs involving 4W5O_A_B,D or 6CBD_A_B,C

Total number of entries: 35

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4OLA_A_B 4W5O_A_B,D 0.92 0.92 3.08 0.2 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
4OLA_A_B 6CBD_A_B,C 0.95 0.91 3.17 0.2 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
4KXT_A_B 6CBD_A_B,C 0.91 0.9 2.96 0.17 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 compare
4KXT_A_B 4W5O_A_B,D 0.87 0.91 3.12 0.17 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 compare
4KRE_A_R 6CBD_A_B,C 0.86 0.93 2.27 0.09 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
4KRE_A_R 4W5O_A_B,D 0.84 0.94 2.22 0.09 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
5JS1_A_B 6CBD_A_B,C 0.91 0.91 3.24 0.4 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
5AWH_A_C 6CBD_A_B,C 0.59 0.71 3.34 0.16 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
4Z4D_A_B,D 6CBD_A_B,C 0.95 1.0 0.3 0.93 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
4W5O_A_B,D 5JS1_A_B 0.88 0.92 3.24 0.4 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
4W5O_A_B,D 6OZS_A_C,D 0.44 0.61 2.76 0.15 Ribonuclease H-like compare
4W5O_A_B,D 5I4A_A_B 0.39 0.78 2.71 0.03 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
4W5O_A_B,D 6MFN_A_C,E 0.85 0.92 1.55 0.76 Ribonuclease H-like & Argonaute, N-terminal domain & Middle domain in Argonaute homologs compare
4W5O_A_B,D 5AWH_A_C 0.59 0.71 3.99 0.16 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
4W5O_A_B,D 6OZP_A_C,D 0.57 0.61 2.77 0.15 Ribonuclease H-like compare
4W5O_A_B,D 6OON_A_B 0.90 0.96 1.89 0.33 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
4W5O_A_B,D 4Z4D_A_B,D 0.96 1.0 0.12 0.96 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
4W5O_A_B,D 6D92_A_C 0.59 0.71 4.07 0.11 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
4W5O_A_B,D 4W5T_A_B,D 0.94 0.99 0.26 0.92 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
4W5O_A_B,D 6CBD_A_B,C 0.99 1.0 0.36 0.97 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
4W5O_A_B,D 6OZP_B_C,D 0.48 0.63 2.71 0.1 Ribonuclease H-like compare
4W5O_A_B,D 6OZS_B_C,D 0.49 0.63 2.78 0.14 Ribonuclease H-like compare
4KRF_A_R 6CBD_A_B,C 0.86 0.93 2.39 0.17 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
4KRF_A_R 4W5O_A_B,D 0.86 0.92 2.36 0.25 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
4W5T_A_B,D 6CBD_A_B,C 0.94 0.99 0.4 0.88 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
5I4A_A_B 6CBD_A_B,C 0.39 0.78 2.46 0.03 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
4F3T_A_R 4W5O_A_B,D 0.68 0.92 3.24 0.14 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
4F3T_A_R 6CBD_A_B,C 0.79 0.91 3.2 0.14 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
6CBD_A_B,C 6OZP_A_C,D 0.54 0.61 2.77 0.15 Ribonuclease H-like compare
6CBD_A_B,C 6OZS_B_C,D 0.49 0.63 2.82 0.14 Ribonuclease H-like compare
6CBD_A_B,C 6OZS_A_C,D 0.43 0.61 2.77 0.15 Ribonuclease H-like compare
6CBD_A_B,C 6OON_A_B 0.90 0.95 1.87 0.25 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
6CBD_A_B,C 6D92_A_C 0.57 0.71 3.31 0.11 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
6CBD_A_B,C 6OZP_B_C,D 0.48 0.63 2.7 0.1 Ribonuclease H-like compare
6CBD_A_B,C 6MFN_A_C,E 0.83 0.92 1.43 0.76 Ribonuclease H-like & Argonaute, N-terminal domain & Middle domain in Argonaute homologs compare