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All interfaces > All interologs > Interface groups > group140 > 5AWH_A_C

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

5AWH_A
5AWH_C
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:43 [PRO] C:18 [G] 3.09 D:1 [DC] sugar:BB 44.19
A:45 [PRO] C:18 [G] 3.75 D:1 [DC] 22.32
A:63 [TRP] C:17 [C] 3.78 D:2 [DG] 78.03
A:63 [TRP] C:18 [G] 3.9 D:1 [DC] 78.03
A:65 [ASP] C:17 [C] 3.58 D:2 [DG] sugar:SC 48.86
A:65 [ASP] C:18 [G] 3.94 D:1 [DC] 48.86
A:66 [GLY] C:17 [C] 4.71 D:2 [DG] 65.87
A:66 [GLY] C:18 [G] 3.9 D:1 [DC] 65.87
A:151 [ARG] C:8 [C] 3.95 D:11 [DG] 63.79
A:151 [ARG] C:9 [U] 3.26 D:10 [DA] 63.79
A:175 [GLY] C:8 [C] 3.35 D:11 [DG] 52.67
A:176 [MET] C:7 [C] 4.98 D:12 [DG] 81.43
A:176 [MET] C:8 [C] 2.83 D:11 [DG] 81.43
A:176 [MET] C:9 [U] 3.64 D:10 [DA] 81.43
A:177 [ARG] C:8 [C] 4.66 D:11 [DG] 74.96
A:177 [ARG] C:9 [U] 3.31 D:10 [DA] 74.96
A:178 [TYR] C:7 [C] 4.36 D:12 [DG] 45.61
A:178 [TYR] C:8 [C] 3.5 D:11 [DG] 45.61
A:178 [TYR] C:9 [U] 2.94 D:10 [DA] 45.61
A:200 [VAL] C:10 [A] 3.79 D:9 [DT] 70.77
A:204 [ARG] C:10 [A] 4.75 D:9 [DT] 42.32
A:204 [ARG] C:11 [C] 3.15 D:8 [DG] 42.32
A:209 [ARG] C:11 [C] 3.3 D:8 [DG] 86.64
A:209 [ARG] C:12 [U] 3.26 D:7 [DA] 86.64
A:210 [GLY] C:10 [A] 4.7 D:9 [DT] 80.82
A:210 [GLY] C:11 [C] 2.86 D:8 [DG] 80.82
A:211 [LEU] C:10 [A] 3.54 D:9 [DT] 76.38
A:211 [LEU] C:11 [C] 2.93 D:8 [DG] 76.38
A:242 [GLU] C:9 [U] 3.08 D:10 [DA] 98.28
A:242 [GLU] C:10 [A] 3.35 D:9 [DT] 98.28
A:243 [GLY] C:8 [C] 2.74 D:11 [DG] sugar:BB 72.65
A:243 [GLY] C:9 [U] 3.31 D:10 [DA] 72.65
A:244 [SER] C:8 [C] 3.75 D:11 [DG] 89.74
A:244 [SER] C:9 [U] 3.93 D:10 [DA] 89.74
A:245 [LYS] C:7 [C] 2.57 D:12 [DG] base:SC, sugar:SC 52.27
A:245 [LYS] C:8 [C] 3.44 D:11 [DG] sugar:SC 52.27
A:271 [GLU] C:7 [C] 4.43 D:12 [DG] 57.44
A:275 [ARG] C:7 [C] 2.99 D:12 [DG] 58.92
A:275 [ARG] C:8 [C] 3.15 D:11 [DG] 58.92
A:449 [LEU] C:1 [U] 3.49 86.39
A:454 [ALA] C:1 [U] 2.86 base:BB 67.69
A:461 [ASN] C:1 [U] 4.09 92.45
A:463 [TYR] C:1 [U] 2.59 base/AA stacks 97.93
A:467 [LYS] C:1 [U] 2.85 98.62
A:477 [THR] C:1 [U] 3.08 89.67
A:478 [GLN] C:1 [U] 3.06 98.8
A:478 [GLN] C:2 [U] 3.64 D:17 [DA] 98.8
A:478 [GLN] C:3 [A] 4.65 D:16 [DT] 98.8
A:479 [GLN] C:1 [U] 2.83 60.29
A:479 [GLN] C:2 [U] 3.28 D:17 [DA] 60.29
A:480 [VAL] C:1 [U] 3.92 65.05
A:480 [VAL] C:2 [U] 3.61 D:17 [DA] 65.05
A:481 [ARG] C:1 [U] 3.09 sugar:SC 72.01
A:481 [ARG] C:2 [U] 2.78 D:17 [DA] 72.01
A:484 [THR] C:1 [U] 4.99 93.96
A:484 [THR] C:2 [U] 2.66 D:17 [DA] 93.96
A:487 [LEU] C:2 [U] 4.12 D:17 [DA] 56.37
A:494 [TYR] C:2 [U] 4.18 D:17 [DA] 80.03
A:495 [THR] C:2 [U] 3.32 D:17 [DA] 71.92
A:498 [ASN] C:2 [U] 2.94 D:17 [DA] base:SC 94.14
A:498 [ASN] C:3 [A] 3.86 D:16 [DT] 94.14
A:499 [PHE] C:2 [U] 3.23 D:17 [DA] 61.3
A:506 [LYS] C:1 [U] 3.13 98.62
A:537 [ARG] C:9 [U] 4.93 D:10 [DA] 98.77
A:537 [ARG] C:10 [A] 3.09 D:9 [DT] sugar:SC 98.77
A:541 [ARG] C:10 [A] 4.82 D:9 [DT] 76.43
A:541 [ARG] C:11 [C] 3.12 D:8 [DG] base:SC 76.43
A:541 [ARG] C:12 [U] 4.02 D:7 [DA] 76.43
A:543 [ARG] C:13 [A] 2.9 D:6 [DT] sugar:SC 98.77
A:543 [ARG] C:14 [C] 2.84 D:5 [DG] 98.77
A:568 [TYR] C:14 [C] 4.07 D:5 [DG] 75.82
A:571 [TYR] C:14 [C] 4.92 D:5 [DG] 91.87
A:571 [TYR] C:15 [C] 3.45 D:4 [DG] 91.87
A:606 [ARG] C:13 [A] 3.1 D:6 [DT] sugar:SC 87.5
A:606 [ARG] C:14 [C] 3.53 D:5 [DG] 87.5
A:607 [PRO] C:14 [C] 4.26 D:5 [DG] 92.71
A:607 [PRO] C:15 [C] 3.37 D:4 [DG] 92.71
A:608 [LEU] C:15 [C] 4.04 D:4 [DG] 72.88
A:608 [LEU] C:16 [U] 4.72 D:3 [DA] 72.88
A:609 [LYS] C:15 [C] 3.06 D:4 [DG] 84.27
A:609 [LYS] C:16 [U] 3.4 D:3 [DA] 84.27
A:610 [ARG] C:15 [C] 4.28 D:4 [DG] 70.93
A:610 [ARG] C:16 [U] 2.77 D:3 [DA] 70.93
A:610 [ARG] C:17 [C] 3.96 D:2 [DG] 70.93
A:611 [VAL] C:16 [U] 4.51 D:3 [DA] 58.28
A:686 [ASN] C:5 [A] 4.06 D:14 [DT] 74.5
A:686 [ASN] C:6 [A] 3.58 D:13 [DT] 74.5
A:692 [LYS] C:4 [C] 2.93 D:15 [DG] sugar:SC 91.66
A:692 [LYS] C:5 [A] 3.07 D:14 [DT] 91.66
A:696 [THR] C:5 [A] 4.18 D:14 [DT] 71.68
A:696 [THR] C:6 [A] 4.21 D:13 [DT] 71.68
A:697 [PRO] C:6 [A] 3.44 D:13 [DT] 88.12
A:697 [PRO] C:7 [C] 4.35 D:12 [DG] 88.12
A:699 [PRO] C:6 [A] 4.96 D:13 [DT] 97.36
A:731 [ARG] C:2 [U] 4.41 D:17 [DA] 97.31
A:731 [ARG] C:3 [A] 3.26 D:16 [DT] 97.31
A:731 [ARG] C:4 [C] 3.43 D:15 [DG] 97.31
A:732 [SER] C:3 [A] 2.91 D:16 [DT] 88.38
A:732 [SER] C:4 [C] 3.56 D:15 [DG] 88.38
A:734 [LEU] C:4 [C] 3.85 D:15 [DG] 58.57
A:735 [PRO] C:4 [C] 3.19 D:15 [DG] 95.47
A:735 [PRO] C:5 [A] 4.02 D:14 [DT] 95.47
A:736 [ALA] C:4 [C] 4.61 D:15 [DG] 80.77
A:736 [ALA] C:5 [A] 3.75 D:14 [DT] 80.77
A:737 [ALA] C:4 [C] 4.62 D:15 [DG] 39.74
A:737 [ALA] C:5 [A] 3.32 D:14 [DT] 39.74
A:743 [PHE] C:4 [C] 3.26 D:15 [DG] 39.52
A:754 [ARG] C:1 [U] 3.03 base:SC, base:SC 71.05
A:777 [LEU] C:1 [U] 3.05 98.28
A:777 [LEU] C:3 [A] 3.15 D:16 [DT] 98.28

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group140 5AWH_A_C A: Uncharacterized protein, Rhodobacter sphaeroides (genetically engineered) C: Synthetic construct (synthetic) A4WYU7 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs ✘

Interologs

Total number of interologs for this interface: 13

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
5AWH_A_C 6D92_A_C 0.99 1.0 0.3 0.33 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
5AWH_A_C 6CBD_A_B,C 0.59 0.71 3.34 0.16 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
5AWH_A_C 5JS1_A_B 0.62 0.71 4.1 0.16 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
5AWH_A_C 6OON_A_B 0.65 0.7 3.84 0.16 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
5AWH_A_C 6MFN_A_C,E 0.67 0.7 2.74 0.18 Ribonuclease H-like & Argonaute, N-terminal domain & Middle domain in Argonaute homologs compare
4Z4D_A_B,D 5AWH_A_C 0.59 0.71 4.13 0.17 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
4W5T_A_B,D 5AWH_A_C 0.52 0.72 3.76 0.16 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
4W5O_A_B,D 5AWH_A_C 0.59 0.71 3.99 0.16 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
4OLA_A_B 5AWH_A_C 0.63 0.71 3.34 0.16 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
4KXT_A_B 5AWH_A_C 0.50 0.71 3.34 0.13 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 compare
4KRF_A_R 5AWH_A_C 0.48 0.71 3.98 0.14 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
4KRE_A_R 5AWH_A_C 0.64 0.71 3.88 0.0 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
4F3T_A_R 5AWH_A_C 0.59 0.71 3.48 0.17 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare