RNAprotDB

All interfaces > All interologs > Interface groups > group140 > 5I4A_A_B vs 6OON_A_B

Interface analysis


mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Structure
Structure (with hetatm)
Chain
Chainbow

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show interface as licorice

Common contacts -

5I4A_A
5I4A_B
6OON_A
6OON_B
Conserved?
A:403 [LYS] B:2 [A] A:543 [ASN] B:2 [A] ✔
A:410 [PHE] B:2 [A] A:550 [GLN] B:2 [A] ✔
A:414 [SER] B:2 [A] A:554 [ASN] B:2 [A] ✔
A:376 [LEU] B:1 [U] A:514 [LEU] B:1 [A] ✔
A:614 [TYR] B:4 [A] A:799 [VAL] B:4 [A] ✔
A:398 [PRO] B:1 [U] A:538 [CYS] B:1 [A] ✔
A:398 [PRO] B:2 [A] A:538 [CYS] B:2 [A] ✔
A:621 [HIS] B:4 [A] A:806 [TYR] B:4 [A] ✔
A:609 [THR] B:3 [U] A:795 [CYS] B:3 [A] ✔
A:632 [GLU] B:1 [U] A:817 [TYR] B:1 [A] ✔
A:383 [ILE] B:1 [U] A:521 [TYR] B:1 [A] ✔
A:380 [ILE] B:1 [U] A:518 [THR] B:1 [A] ✔
A:615 [LYS] B:4 [A] A:800 [SER] B:4 [A] ✔
A:612 [THR] B:3 [U] A:797 [ARG] B:3 [A] ✔
A:612 [THR] B:4 [A] A:797 [ARG] B:4 [A] ✔
A:399 [ILE] B:1 [U] A:539 [VAL] B:1 [A] ✔
A:399 [ILE] B:2 [A] A:539 [VAL] B:2 [A] ✔
A:411 [ILE] B:2 [A] A:551 [THR] B:2 [A] ✔
A:379 [TYR] B:1 [U] A:517 [LYS] B:1 [A] ✔
A:415 [TYR] B:2 [A] A:555 [LEU] B:2 [A] ✔
A:418 [LYS] B:1 [U] A:558 [LYS] B:1 [A] ✔
A:418 [LYS] B:2 [A] A:558 [LYS] B:2 [A] ✔
A:418 [LYS] B:3 [U] A:558 [LYS] B:3 [A] ✔
A:188 [ILE] B:21 [U] A:270 [ARG] B:15 [A] ✔
A:608 [SER] B:3 [U] A:794 [ARG] B:3 [A] ✔
A:608 [SER] B:4 [A] A:794 [ARG] B:4 [A] ✔
A:573 [PHE] B:4 [A] A:758 [ILE] B:4 [A] ✔
A:400 [LEU] B:1 [U] A:540 [GLN] B:1 [A] ✔
A:400 [LEU] B:2 [A] A:540 [GLN] B:2 [A] ✔
A:378 [LYS] B:1 [U] A:516 [GLY] B:1 [A] ✔
A:31 [ARG] B:21 [U] A:59 [ARG] B:15 [A] ✔
A:403 [LYS] B:3 [U] A:543 [ASN] B:3 [A] ❌ 6OON_A_B
A:104 [LYS] B:8 [C] A:167 [VAL] B:8 [A] ❌ 6OON_A_B
A:609 [THR] B:2 [A] A:795 [CYS] B:2 [A] ❌ 6OON_A_B
A:574 [LEU] B:4 [A] A:759 [GLN] B:4 [A] ❌ 6OON_A_B
A:379 [TYR] B:4 [A] A:517 [LYS] B:4 [A] ❌ 6OON_A_B
A:148 [LYS] B:8 [C] A:210 [SER] B:8 [A] ❌ 5I4A_A_B
A:414 [SER] B:3 [U] A:554 [ASN] B:3 [A] ❌ 5I4A_A_B
A:545 [ASN] B:8 [C] A:712 [ARG] B:8 [A] ❌ 5I4A_A_B
A:609 [THR] B:4 [A] A:795 [CYS] B:4 [A] ❌ 5I4A_A_B
A:200 [TYR] B:21 [U] A:335 [ASN] B:15 [A] ❌ 6OON_A:335 no longer at interface
A:196 [VAL] B:21 [U] A:318 [LEU] B:15 [A] ❌ 6OON_A:318 no longer at interface
A:204 [TYR] B:21 [U] A:339 [GLY] B:15 [A] ❌ 6OON_A:339 no longer at interface
A:198 [VAL] B:21 [U] A:320 [VAL] B:15 [A] ❌ 6OON_A:320 no longer at interface
A:199 [ALA] B:21 [U] A:334 [CYS] B:15 [A] ❌ 6OON_A:334 no longer at interface
A:635 [LEU] B:1 [U] A:857 [THR] B:1 [A] ❌ 6OON_A:857 no longer at interface
A:635 [LEU] B:3 [U] A:857 [THR] B:3 [A] ❌ 6OON_A:857 no longer at interface
A:108 [ASN] B:8 [C] A:170 [SER] B:8 [A] ❌ 6OON_A:170 no longer at interface
A:131 [LYS] B:8 [C] A:193 [HIS] B:8 [A] ❌ 6OON_A:193 no longer at interface
A:625 [LYS] B:4 [A] A:810 [LEU] B:4 [A] ❌ 6OON_A:810 no longer at interface
A:105 [LYS] B:8 [C] A:168 [GLY] B:8 [A] ❌ 6OON_A:168 no longer at interface
A:636 [TYR] B:1 [U] A:858 [MET] B:1 [A] ❌ 6OON_A:858 no longer at interface
A:636 [TYR] B:3 [U] A:858 [MET] B:3 [A] ❌ 6OON_A:858 no longer at interface
A:190 [ILE] B:21 [U] A:272 [CYS] B:15 [A] ❌ 6OON_A:272 no longer at interface
A:381 [GLY] B:1 [U] A:519 [PRO] B:1 [A] ❌ 6OON_A:519 no longer at interface
A:147 [PRO] B:8 [C] A:209 [VAL] B:8 [A] ❌ 5I4A_A:147 no longer at interface
A:149 [PHE] B:8 [C] A:211 [ALA] B:8 [A] ❌ 5I4A_A:149 no longer at interface
A:150 [THR] B:8 [C] A:212 [THR] B:8 [A] ❌ 5I4A_A:150 no longer at interface
A:182 [LEU] B:21 [U] A:256 [LYS] B:15 [A] ❌ 5I4A_A:182 no longer at interface
A:219 [SER] B:8 [C] A:354 [MET] B:8 [A] ❌ 5I4A_A:219 no longer at interface
A:387 [VAL] B:1 [U] A:525 [LYS] B:1 [A] ❌ 5I4A_A:387 no longer at interface
A:396 [LEU] B:1 [U] A:536 [THR] B:1 [A] ❌ 5I4A_A:396 no longer at interface
A:397 [GLN] B:1 [U] A:537 [GLN] B:1 [A] ❌ 5I4A_A:397 no longer at interface
A:397 [GLN] B:2 [A] A:537 [GLN] B:2 [A] ❌ 5I4A_A:397 no longer at interface
A:27 [LYS] B:21 [U] A:55 [LYS] B:15 [A] ❌ 5I4A_A:27 no longer at interface
A:28 [LEU] B:21 [U] A:56 [ARG] B:15 [A] ❌ 5I4A_A:28 no longer at interface
A:422 [PHE] B:1 [U] A:562 [LYS] B:1 [A] ❌ 5I4A_A:422 no longer at interface
A:29 [PHE] B:21 [U] A:57 [PRO] B:15 [A] ❌ 5I4A_A:29 no longer at interface
A:32 [ASN] B:21 [U] A:60 [VAL] B:15 [A] ❌ 5I4A_A:32 no longer at interface
A:547 [ASN] B:8 [C] A:714 [HIS] B:8 [A] ❌ 5I4A_A:547 no longer at interface
A:549 [ASN] B:8 [C] A:716 [ARG] B:8 [A] ❌ 5I4A_A:549 no longer at interface
A:577 [LYS] B:8 [C] A:763 [ARG] B:8 [A] ❌ 5I4A_A:577 no longer at interface
A:606 [ALA] B:3 [U] A:792 [TYR] B:3 [A] ❌ 5I4A_A:606 no longer at interface
A:606 [ALA] B:4 [A] A:792 [TYR] B:4 [A] ❌ 5I4A_A:606 no longer at interface
A:629 [THR] B:1 [U] A:814 [ARG] B:1 [A] ❌ 5I4A_A:629 no longer at interface
A:639 [TYR] B:1 [U] A:861 [ALA] B:1 [A] ❌ 5I4A_A:639 no longer at interface
A:639 [TYR] B:3 [U] A:861 [ALA] B:3 [A] ❌ 5I4A_A:639 no longer at interface

logo_download Export the table of contacts

Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs 0.77 3.58 0.05 0.77 0.16 0.45 0.5 0.56 0.62 0.16 0.80


Other pairs involving 5I4A_A_B or 6OON_A_B

Total number of entries: 28

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4OLA_A_B 5I4A_A_B 0.61 0.77 3.22 0.03 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
4OLA_A_B 6OON_A_B 0.99 0.95 1.78 0.9 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
6MFN_A_C,E 6OON_A_B 0.88 0.89 1.67 0.17 Ribonuclease H-like & Argonaute, N-terminal domain & Middle domain in Argonaute homologs compare
4KXT_A_B 5I4A_A_B 0.68 0.77 3.27 0.03 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 compare
4KXT_A_B 6OON_A_B 0.95 0.95 2.24 0.83 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 compare
4KRE_A_R 5I4A_A_B 0.58 0.77 2.76 0.03 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
4KRE_A_R 6OON_A_B 0.96 0.98 0.65 0.45 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
6D92_A_C 6OON_A_B 0.64 0.7 3.88 0.08 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
5JS1_A_B 6OON_A_B 0.98 0.96 1.74 0.2 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
6OON_A_B 6OZP_B_C,D 0.49 0.61 2.62 0.05 Ribonuclease H-like compare
6OON_A_B 6OZS_B_C,D 0.46 0.61 2.69 0.09 Ribonuclease H-like compare
6OON_A_B 6OZS_A_C,D 0.52 0.61 2.6 0.09 Ribonuclease H-like compare
6OON_A_B 6OZP_A_C,D 0.57 0.61 2.57 0.08 Ribonuclease H-like compare
5AWH_A_C 6OON_A_B 0.65 0.7 3.84 0.16 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
4Z4D_A_B,D 5I4A_A_B 0.39 0.78 3.14 0.03 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
4Z4D_A_B,D 6OON_A_B 0.90 0.96 1.83 0.33 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
4W5O_A_B,D 5I4A_A_B 0.39 0.78 2.71 0.03 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
4W5O_A_B,D 6OON_A_B 0.90 0.96 1.89 0.33 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
4KRF_A_R 6OON_A_B 0.97 0.98 0.92 0.33 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
4KRF_A_R 5I4A_A_B 0.59 0.77 2.79 0.03 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
4W5T_A_B,D 6OON_A_B 0.88 0.96 1.87 0.42 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
4W5T_A_B,D 5I4A_A_B 0.51 0.78 2.78 0.03 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
5I4A_A_B 6CBD_A_B,C 0.39 0.78 2.46 0.03 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
5I4A_A_B 5JS1_A_B 0.60 0.77 3.53 0.03 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
5I4A_A_B 6OON_A_B 0.56 0.77 3.58 0.05 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
4F3T_A_R 5I4A_A_B 0.56 0.77 3.27 0.03 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
4F3T_A_R 6OON_A_B 0.98 0.96 1.82 0.25 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
6CBD_A_B,C 6OON_A_B 0.90 0.95 1.87 0.25 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare