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All interfaces > All interologs > Interface groups > group140 > 6D92_A_C

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Licorice
Surface

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Licorice
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Chain
Chain (with hetatm)
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Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

6D92_A
6D92_C
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:42 [LEU] C:18 [A] 4.69 G:-13 [DT] 42.97
A:43 [PRO] C:18 [A] 2.58 G:-13 [DT] sugar:BB 44.16
A:44 [ASP] C:18 [A] 4.65 G:-13 [DT] 81.3
A:45 [PRO] C:17 [G] 3.93 G:-12 [DC] 22.31
A:45 [PRO] C:18 [A] 3.86 G:-13 [DT] 22.31
A:63 [TRP] C:17 [G] 3.56 G:-12 [DC] 78.02
A:63 [TRP] C:18 [A] 4.0 G:-13 [DT] 78.02
A:65 [ASP] C:17 [G] 3.59 G:-12 [DC] 48.85
A:65 [ASP] C:18 [A] 3.47 G:-13 [DT] 48.85
A:66 [GLY] C:17 [G] 4.61 G:-12 [DC] 65.85
A:66 [GLY] C:18 [A] 4.02 G:-13 [DT] 65.85
A:151 [ARG] C:8 [A] 3.95 G:-3 [DT] 63.79
A:151 [ARG] C:9 [C] 3.22 G:-4 [DG] 63.79
A:175 [GLY] C:8 [A] 3.38 G:-3 [DT] 52.65
A:176 [MET] C:7 [C] 4.92 G:-2 [DG] 81.42
A:176 [MET] C:8 [A] 2.81 G:-3 [DT] 81.42
A:176 [MET] C:9 [C] 3.49 G:-4 [DG] 81.42
A:177 [ARG] C:8 [A] 4.79 G:-3 [DT] 74.96
A:177 [ARG] C:9 [C] 3.34 G:-4 [DG] 74.96
A:178 [TYR] C:7 [C] 4.41 G:-2 [DG] 45.6
A:178 [TYR] C:8 [A] 3.56 G:-3 [DT] 45.6
A:178 [TYR] C:9 [C] 2.9 G:-4 [DG] 45.6
A:200 [VAL] C:10 [A] 4.4 G:-5 [DT] 70.77
A:204 [ARG] C:10 [A] 3.99 G:-5 [DT] 42.28
A:204 [ARG] C:11 [G] 2.61 G:-6 [DC] 42.28
A:209 [ARG] C:11 [G] 3.41 G:-6 [DC] 86.63
A:209 [ARG] C:12 [G] 3.14 G:-7 [DC] 86.63
A:210 [GLY] C:10 [A] 4.72 G:-5 [DT] 80.81
A:210 [GLY] C:11 [G] 2.71 G:-6 [DC] 80.81
A:211 [LEU] C:10 [A] 3.67 G:-5 [DT] 76.37
A:211 [LEU] C:11 [G] 2.99 G:-6 [DC] 76.37
A:242 [GLU] C:9 [C] 2.91 G:-4 [DG] 98.28
A:242 [GLU] C:10 [A] 3.42 G:-5 [DT] 98.28
A:243 [GLY] C:8 [A] 2.82 G:-3 [DT] sugar:BB 72.65
A:243 [GLY] C:9 [C] 3.36 G:-4 [DG] 72.65
A:244 [SER] C:8 [A] 3.84 G:-3 [DT] 89.74
A:244 [SER] C:9 [C] 3.94 G:-4 [DG] 89.74
A:245 [LYS] C:6 [G] 4.81 G:-1 [DC] 52.25
A:245 [LYS] C:7 [C] 2.82 G:-2 [DG] base:SC, sugar:SC 52.25
A:245 [LYS] C:8 [A] 2.76 G:-3 [DT] 52.25
A:275 [ARG] C:7 [C] 3.21 G:-2 [DG] 58.9
A:275 [ARG] C:8 [A] 3.18 G:-3 [DT] 58.9
A:449 [LEU] C:1 [U] 3.53 86.38
A:454 [ALA] C:1 [U] 2.82 base:BB 67.68
A:455 [ARG] C:1 [U] 4.93 32.95
A:461 [ASN] C:1 [U] 4.05 92.45
A:463 [TYR] C:1 [U] 2.58 base/AA stacks 97.93
A:467 [LYS] C:1 [U] 2.88 98.62
A:477 [THR] C:1 [U] 3.29 89.66
A:478 [GLN] C:1 [U] 2.8 98.8
A:478 [GLN] C:2 [U] 3.68 98.8
A:478 [GLN] C:3 [A] 4.67 G:2 [DA] 98.8
A:479 [GLN] C:1 [U] 2.89 60.28
A:479 [GLN] C:2 [U] 3.3 60.28
A:480 [VAL] C:1 [U] 3.98 65.04
A:480 [VAL] C:2 [U] 3.67 65.04
A:481 [ARG] C:1 [U] 2.92 sugar:SC 72.0
A:481 [ARG] C:2 [U] 2.86 72.0
A:484 [THR] C:1 [U] 4.97 93.96
A:484 [THR] C:2 [U] 2.59 93.96
A:487 [LEU] C:2 [U] 4.62 56.35
A:494 [TYR] C:2 [U] 4.09 80.02
A:495 [THR] C:2 [U] 3.1 71.91
A:498 [ASN] C:2 [U] 2.87 base:SC 94.14
A:498 [ASN] C:3 [A] 3.76 G:2 [DA] 94.14
A:499 [PHE] C:2 [U] 3.3 61.32
A:506 [LYS] C:1 [U] 3.15 98.62
A:532 [GLU] C:11 [G] 4.84 G:-6 [DC] 70.71
A:537 [ARG] C:9 [C] 4.99 G:-4 [DG] 98.77
A:537 [ARG] C:10 [A] 3.14 G:-5 [DT] sugar:SC 98.77
A:541 [ARG] C:10 [A] 5.0 G:-5 [DT] 76.42
A:541 [ARG] C:11 [G] 3.11 G:-6 [DC] base:SC, sugar:SC 76.42
A:541 [ARG] C:12 [G] 3.98 G:-7 [DC] sugar:SC 76.42
A:543 [ARG] C:13 [U] 2.86 G:-8 [DA] 98.77
A:543 [ARG] C:14 [G] 2.6 G:-9 [DC] 98.77
A:568 [TYR] C:14 [G] 4.36 G:-9 [DC] 75.81
A:571 [TYR] C:15 [A] 3.95 G:-10 [DT] 91.86
A:606 [ARG] C:12 [G] 4.62 G:-7 [DC] 87.49
A:606 [ARG] C:13 [U] 2.63 G:-8 [DA] sugar:SC 87.49
A:606 [ARG] C:14 [G] 3.37 G:-9 [DC] 87.49
A:607 [PRO] C:14 [G] 4.37 G:-9 [DC] 92.71
A:607 [PRO] C:15 [A] 3.52 G:-10 [DT] 92.71
A:608 [LEU] C:15 [A] 4.19 G:-10 [DT] 72.87
A:608 [LEU] C:16 [C] 4.8 G:-11 [DG] 72.87
A:609 [LYS] C:15 [A] 2.75 G:-10 [DT] 84.26
A:609 [LYS] C:16 [C] 3.38 G:-11 [DG] 84.26
A:610 [ARG] C:15 [A] 4.37 G:-10 [DT] 70.91
A:610 [ARG] C:16 [C] 2.82 G:-11 [DG] 70.91
A:610 [ARG] C:17 [G] 2.79 G:-12 [DC] 70.91
A:611 [VAL] C:16 [C] 4.66 G:-11 [DG] 58.27
A:686 [ASN] C:5 [U] 3.95 G:0 [DA] 74.49
A:686 [ASN] C:6 [G] 3.41 G:-1 [DC] 74.49
A:692 [LYS] C:4 [C] 3.04 G:1 [DG] sugar:SC 91.63
A:692 [LYS] C:5 [U] 3.26 G:0 [DA] 91.63
A:696 [THR] C:5 [U] 4.23 G:0 [DA] 71.68
A:696 [THR] C:6 [G] 4.41 G:-1 [DC] 71.68
A:697 [PRO] C:6 [G] 3.73 G:-1 [DC] 88.11
A:697 [PRO] C:7 [C] 4.21 G:-2 [DG] 88.11
A:699 [PRO] C:6 [G] 4.71 G:-1 [DC] 97.36
A:731 [ARG] C:2 [U] 4.48 97.31
A:731 [ARG] C:3 [A] 3.04 G:2 [DA] 97.31
A:731 [ARG] C:4 [C] 3.72 G:1 [DG] 97.31
A:732 [SER] C:3 [A] 3.0 G:2 [DA] 88.38
A:732 [SER] C:4 [C] 3.5 G:1 [DG] 88.38
A:734 [LEU] C:4 [C] 3.7 G:1 [DG] 58.56
A:735 [PRO] C:4 [C] 3.21 G:1 [DG] 95.44
A:735 [PRO] C:5 [U] 3.9 G:0 [DA] 95.44
A:736 [ALA] C:4 [C] 4.6 G:1 [DG] 80.76
A:736 [ALA] C:5 [U] 3.68 G:0 [DA] 80.76
A:737 [ALA] C:4 [C] 4.64 G:1 [DG] 39.73
A:737 [ALA] C:5 [U] 3.34 G:0 [DA] 39.73
A:743 [PHE] C:4 [C] 3.26 G:1 [DG] 39.51
A:754 [ARG] C:1 [U] 3.07 base:SC, base:SC 71.05
A:777 [LEU] C:1 [U] 3.13 98.28
A:777 [LEU] C:3 [A] 3.2 G:2 [DA] 98.28

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group140 6D92_A_C A: Uncharacterized protein, Rhodobacter sphaeroides (strain atcc 17025 / ath 2.4.3) (genetically engineered) C: Rhodobacter sphaeroides atcc 17025 (synthetic) A4WYU7 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs ✘

Interologs

Total number of interologs for this interface: 13

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4OLA_A_B 6D92_A_C 0.61 0.7 3.32 0.1 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
4KXT_A_B 6D92_A_C 0.48 0.71 3.26 0.08 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 compare
4KRE_A_R 6D92_A_C 0.62 0.7 3.92 0.09 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
6D92_A_C 6OON_A_B 0.64 0.7 3.88 0.08 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
6D92_A_C 6MFN_A_C,E 0.65 0.7 2.72 0.12 Ribonuclease H-like & Argonaute, N-terminal domain & Middle domain in Argonaute homologs compare
5JS1_A_B 6D92_A_C 0.60 0.71 3.43 0.15 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
5AWH_A_C 6D92_A_C 0.99 1.0 0.3 0.33 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
4Z4D_A_B,D 6D92_A_C 0.59 0.71 4.22 0.11 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
4W5O_A_B,D 6D92_A_C 0.59 0.71 4.07 0.11 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
4KRF_A_R 6D92_A_C 0.62 0.71 4.01 0.17 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
4W5T_A_B,D 6D92_A_C 0.53 0.71 3.89 0.11 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
4F3T_A_R 6D92_A_C 0.53 0.71 3.42 0.14 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare
6CBD_A_B,C 6D92_A_C 0.57 0.71 3.31 0.11 Ribonuclease H-like & Argonaute, N-terminal domain & SH3 & Middle domain in Argonaute homologs compare