RNAprotDB

All interfaces > All interologs > Interface groups > group140 > 6OZP_A_C,D

Interface analysis

mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show as licorice
show Accessibility
Rim - Core

Contacts -

6OZP_A
6OZP_C,D
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:52 [ASP] C:12 [U] 2.86 D:46 [U] 98.75
A:53 [VAL] C:12 [U] 3.65 D:46 [U] 83.54
A:53 [VAL] C:13 [A] 5.0 D:45 [U] 83.54
A:54 [SER] C:12 [U] 4.48 D:46 [U] 89.37
A:54 [SER] C:13 [A] 3.26 D:45 [U] 89.37
A:55 [PHE] C:12 [U] 3.62 D:46 [U] 83.02
A:55 [PHE] C:13 [A] 3.01 D:45 [U] 83.02
A:57 [LYS] C:13 [A] 3.9 D:45 [U] 50.35
A:57 [LYS] C:14 [U] 5.0 D:44 [A] 50.35
A:126 [ASP] C:12 [U] 2.93 D:46 [U] 89.18
A:155 [LYS] C:12 [U] 2.97 D:46 [U] 90.13
A:156 [LYS] C:12 [U] 3.17 D:46 [U] base:SC 76.35
A:156 [LYS] D:45 [U] 4.56 C:13 [A] 76.35
A:156 [LYS] D:46 [U] 2.74 C:12 [U] base:SC 76.35
A:200 [HIS] D:40 [A] 4.8 C:18 [U] 57.38
A:200 [HIS] D:41 [U] 2.89 C:17 [A] 57.38
A:202 [HIS] D:41 [U] 3.39 C:17 [A] 41.08
A:203 [SER] D:41 [U] 3.71 C:17 [A] 66.0
A:203 [SER] D:42 [G] 2.73 C:16 [C] 66.0
A:204 [THR] D:41 [U] 4.16 C:17 [A] 44.38
A:204 [THR] D:42 [G] 2.94 C:16 [C] 44.38
A:205 [LYS] D:42 [G] 2.88 C:16 [C] 73.46
A:205 [LYS] D:43 [C] 3.52 C:15 [G] 73.46
A:230 [PHE] D:40 [A] 3.42 C:18 [U] 61.66
A:230 [PHE] D:41 [U] 3.49 C:17 [A] 61.66
A:231 [ARG] D:40 [A] 4.83 C:18 [U] 83.94
A:231 [ARG] D:41 [U] 2.76 C:17 [A] 83.94
A:231 [ARG] D:42 [G] 3.56 C:16 [C] 83.94
A:237 [ARG] D:39 [C] 3.05 C:19 [G] 81.12
A:237 [ARG] D:40 [A] 2.68 C:18 [U] 81.12
A:240 [ASP] C:12 [U] 3.29 D:46 [U] 87.52
A:240 [ASP] C:13 [A] 4.65 D:45 [U] 87.52
A:241 [ILE] D:39 [C] 3.82 C:19 [G] 15.68
A:241 [ILE] D:40 [A] 4.71 C:18 [U] 15.68
A:244 [ARG] C:13 [A] 4.18 D:45 [U] 72.31
A:244 [ARG] D:38 [G] 4.54 C:20 [C] 72.31
A:244 [ARG] D:39 [C] 2.57 C:19 [G] 72.31
A:248 [ARG] D:37 [U] 4.59 C:21 [A] 55.86
A:248 [ARG] D:38 [G] 3.58 C:20 [C] 55.86
A:248 [ARG] D:39 [C] 4.81 C:19 [G] 55.86

logo_download Export the table of contacts

*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group140 6OZP_A_C,D A: Endonuclease v, Mus musculus (genetically engineered) C: Synthetic construct (synthetic) D: Synthetic construct (synthetic) Q8C9A2 Ribonuclease H-like ✘

Interologs

Total number of interologs for this interface: 14

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4OLA_A_B 6OZP_A_C,D 0.58 0.6 2.64 0.1 Ribonuclease H-like compare
4KXT_A_B 6OZP_A_C,D 0.57 0.6 2.58 0.08 Ribonuclease H-like compare
6MFN_A_C,E 6OZP_A_C,D 0.59 0.61 2.53 0.1 Ribonuclease H-like compare
5JS1_A_B 6OZP_A_C,D 0.58 0.61 2.68 0.1 Ribonuclease H-like compare
6OON_A_B 6OZP_A_C,D 0.57 0.61 2.57 0.08 Ribonuclease H-like compare
4Z4D_A_B,D 6OZP_A_C,D 0.56 0.61 2.76 0.15 Ribonuclease H-like compare
4W5O_A_B,D 6OZP_A_C,D 0.57 0.61 2.77 0.15 Ribonuclease H-like compare
4W5T_A_B,D 6OZP_A_C,D 0.54 0.61 2.85 0.1 Ribonuclease H-like compare
4F3T_A_R 6OZP_A_C,D 0.50 0.61 2.68 0.1 Ribonuclease H-like compare
6CBD_A_B,C 6OZP_A_C,D 0.54 0.61 2.77 0.15 Ribonuclease H-like compare
4KRE_A_R 6OZP_A_C,D 0.62 0.62 2.58 0.1 Ribonuclease H-like compare
4KRF_A_R 6OZP_A_C,D 0.48 0.62 2.57 0.08 Ribonuclease H-like compare
6OZP_A_C,D 6OZS_B_C,D 0.94 0.94 0.56 0.73 Ribonuclease H-like compare
6OZP_A_C,D 6OZS_A_C,D 0.99 0.99 0.16 1.0 Ribonuclease H-like compare