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All interfaces > All interologs > Interface groups > group140 > 6OZP_B_C,D

Interface analysis

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Protein

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Interface

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Rim - Core

Contacts -

6OZP_B
6OZP_C,D
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
B:52 [ASP] D:35 [U] 2.93 C:23 [U] 98.87
B:53 [VAL] D:35 [U] 3.82 C:23 [U] 84.05
B:53 [VAL] D:36 [A] 4.92 C:22 [U] 84.05
B:54 [SER] D:35 [U] 4.57 C:23 [U] 90.63
B:54 [SER] D:36 [A] 3.34 C:22 [U] 90.63
B:55 [PHE] D:35 [U] 3.46 C:23 [U] 83.62
B:55 [PHE] D:36 [A] 3.0 C:22 [U] 83.62
B:57 [LYS] D:36 [A] 3.06 C:22 [U] 58.4
B:57 [LYS] D:37 [U] 3.97 C:21 [A] 58.4
B:100 [GLU] D:35 [U] 4.91 C:23 [U] 98.47
B:126 [ASP] D:35 [U] 3.03 C:23 [U] 93.11
B:155 [LYS] D:35 [U] 2.93 C:23 [U] 92.9
B:156 [LYS] C:22 [U] 4.46 D:36 [A] 75.93
B:156 [LYS] C:23 [U] 3.09 D:35 [U] base:SC 75.93
B:156 [LYS] D:35 [U] 2.87 C:23 [U] base:SC 75.93
B:156 [LYS] D:36 [A] 4.98 C:22 [U] 75.93
B:202 [HIS] C:18 [U] 3.54 D:40 [A] 50.5
B:203 [SER] C:18 [U] 3.84 D:40 [A] 66.96
B:203 [SER] C:19 [G] 2.59 D:39 [C] 66.96
B:204 [THR] C:18 [U] 4.34 D:40 [A] 53.45
B:204 [THR] C:19 [G] 3.04 D:39 [C] 53.45
B:205 [LYS] C:19 [G] 3.02 D:39 [C] 79.04
B:205 [LYS] C:20 [C] 3.22 D:38 [G] 79.04
B:230 [PHE] C:17 [A] 3.4 D:41 [U] 60.46
B:230 [PHE] C:18 [U] 3.46 D:40 [A] 60.46
B:231 [ARG] C:17 [A] 4.91 D:41 [U] 84.15
B:231 [ARG] C:18 [U] 2.85 D:40 [A] 84.15
B:231 [ARG] C:19 [G] 3.73 D:39 [C] 84.15
B:237 [ARG] C:16 [C] 3.15 D:42 [G] 82.27
B:237 [ARG] C:17 [A] 2.71 D:41 [U] 82.27
B:240 [ASP] D:35 [U] 3.41 C:23 [U] 91.34
B:240 [ASP] D:36 [A] 4.78 C:22 [U] 91.34
B:241 [ILE] C:16 [C] 3.8 D:42 [G] 44.21
B:241 [ILE] C:17 [A] 4.56 D:41 [U] 44.21
B:244 [ARG] C:15 [G] 4.56 D:43 [C] 76.2
B:244 [ARG] C:16 [C] 2.6 D:42 [G] 76.2
B:244 [ARG] D:36 [A] 4.18 C:22 [U] 76.2
B:248 [ARG] C:14 [U] 3.59 D:44 [A] 55.28
B:248 [ARG] C:15 [G] 3.0 D:43 [C] 55.28
B:248 [ARG] C:16 [C] 4.3 D:42 [G] 55.28

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group140 6OZP_B_C,D B: Endonuclease v, Mus musculus (genetically engineered) C: Synthetic construct (synthetic) D: Synthetic construct (synthetic) Q8C9A2 Ribonuclease H-like ✘

Interologs

Total number of interologs for this interface: 14

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4OLA_A_B 6OZP_B_C,D 0.50 0.6 2.63 0.05 Ribonuclease H-like compare
6OZP_B_C,D 6OZS_A_C,D 0.96 0.94 0.45 0.73 Ribonuclease H-like compare
6OZP_B_C,D 6OZS_B_C,D 0.97 1.0 0.24 1.0 Ribonuclease H-like compare
6MFN_A_C,E 6OZP_B_C,D 0.47 0.63 2.56 0.05 Ribonuclease H-like compare
4KXT_A_B 6OZP_B_C,D 0.48 0.61 2.62 0.05 Ribonuclease H-like compare
4KRE_A_R 6OZP_B_C,D 0.54 0.62 2.51 0.05 Ribonuclease H-like compare
5JS1_A_B 6OZP_B_C,D 0.50 0.61 2.67 0.05 Ribonuclease H-like compare
6OON_A_B 6OZP_B_C,D 0.49 0.61 2.62 0.05 Ribonuclease H-like compare
4Z4D_A_B,D 6OZP_B_C,D 0.48 0.63 2.69 0.1 Ribonuclease H-like compare
4W5O_A_B,D 6OZP_B_C,D 0.48 0.63 2.71 0.1 Ribonuclease H-like compare
4KRF_A_R 6OZP_B_C,D 0.53 0.62 2.61 0.05 Ribonuclease H-like compare
4W5T_A_B,D 6OZP_B_C,D 0.37 0.63 2.75 0.05 Ribonuclease H-like compare
4F3T_A_R 6OZP_B_C,D 0.53 0.61 2.72 0.05 Ribonuclease H-like compare
6CBD_A_B,C 6OZP_B_C,D 0.48 0.63 2.7 0.1 Ribonuclease H-like compare