Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
StructureStructure (with hetatm)
Chain
Chainbow
View
Focus on
InterfaceRNA
Protein
All
Show chains
Interface
show interface as licoriceCommon contacts -
6OZP_B
|
6OZP_C,D
|
6OZS_B
|
6OZS_C,D
|
Conserved?
|
---|---|---|---|---|
B:204 [THR] | C:18 [U] | B:204 [THR] | C:324 [U] | ✔ |
B:204 [THR] | C:19 [G] | B:204 [THR] | C:325 [G] | ✔ |
B:155 [LYS] | D:35 [U] | B:155 [LYS] | D:647 [U] | ✔ |
B:230 [PHE] | C:17 [A] | B:230 [PHE] | C:323 [A] | ✔ |
B:230 [PHE] | C:18 [U] | B:230 [PHE] | C:324 [U] | ✔ |
B:205 [LYS] | C:19 [G] | B:205 [LYS] | C:325 [G] | ✔ |
B:205 [LYS] | C:20 [C] | B:205 [LYS] | C:326 [C] | ✔ |
B:57 [LYS] | D:36 [A] | B:57 [LYS] | D:648 [A] | ✔ |
B:57 [LYS] | D:37 [U] | B:57 [LYS] | D:649 [U] | ✔ |
B:100 [GLU] | D:35 [U] | B:100 [GLU] | D:647 [U] | ✔ |
B:248 [ARG] | C:14 [U] | B:248 [ARG] | C:320 [U] | ✔ |
B:248 [ARG] | C:15 [G] | B:248 [ARG] | C:321 [G] | ✔ |
B:237 [ARG] | C:16 [C] | B:237 [ARG] | C:322 [C] | ✔ |
B:237 [ARG] | C:17 [A] | B:237 [ARG] | C:323 [A] | ✔ |
B:156 [LYS] | C:23 [U] | B:156 [LYS] | C:329 [U] | ✔ |
B:156 [LYS] | D:35 [U] | B:156 [LYS] | D:647 [U] | ✔ |
B:203 [SER] | C:18 [U] | B:203 [SER] | C:324 [U] | ✔ |
B:203 [SER] | C:19 [G] | B:203 [SER] | C:325 [G] | ✔ |
B:126 [ASP] | D:35 [U] | B:126 [ASP] | D:647 [U] | ✔ |
B:241 [ILE] | C:16 [C] | B:241 [ILE] | C:322 [C] | ✔ |
B:241 [ILE] | C:17 [A] | B:241 [ILE] | C:323 [A] | ✔ |
B:52 [ASP] | D:35 [U] | B:52 [ASP] | D:647 [U] | ✔ |
B:54 [SER] | D:35 [U] | B:54 [SER] | D:647 [U] | ✔ |
B:54 [SER] | D:36 [A] | B:54 [SER] | D:648 [A] | ✔ |
B:240 [ASP] | D:35 [U] | B:240 [ASP] | D:647 [U] | ✔ |
B:240 [ASP] | D:36 [A] | B:240 [ASP] | D:648 [A] | ✔ |
B:202 [HIS] | C:18 [U] | B:202 [HIS] | C:324 [U] | ✔ |
B:53 [VAL] | D:35 [U] | B:53 [VAL] | D:647 [U] | ✔ |
B:55 [PHE] | D:35 [U] | B:55 [PHE] | D:647 [U] | ✔ |
B:55 [PHE] | D:36 [A] | B:55 [PHE] | D:648 [A] | ✔ |
B:231 [ARG] | C:17 [A] | B:231 [ARG] | C:323 [A] | ✔ |
B:231 [ARG] | C:18 [U] | B:231 [ARG] | C:324 [U] | ✔ |
B:231 [ARG] | C:19 [G] | B:231 [ARG] | C:325 [G] | ✔ |
B:244 [ARG] | C:15 [G] | B:244 [ARG] | C:321 [G] | ✔ |
B:244 [ARG] | C:16 [C] | B:244 [ARG] | C:322 [C] | ✔ |
B:244 [ARG] | D:36 [A] | B:244 [ARG] | D:648 [A] | ✔ |
B:248 [ARG] | C:16 [C] | B:248 [ARG] | C:322 [C] | ❌ 6OZS_B_C,D |
B:156 [LYS] | D:36 [A] | B:156 [LYS] | D:648 [A] | ❌ 6OZS_B_C,D |
B:53 [VAL] | D:36 [A] | B:53 [VAL] | D:648 [A] | ❌ 6OZS_B_C,D |
B:230 [PHE] | C:16 [C] | B:230 [PHE] | C:322 [C] | ❌ 6OZP_B_C,D |
B:156 [LYS] | C:22 [U] | B:156 [LYS] | C:328 [U] | ❌ 6OZS_C:328 no longer at interface |
B:232 [ILE] | C:18 [U] | B:232 [ILE] | C:324 [U] | ❌ 6OZP_B:232 no longer at interface |
B:56 [VAL] | D:36 [A] | B:56 [VAL] | D:648 [A] | ❌ 6OZP_B:56 no longer at interface |
Properties of this pair
Common ECOD label(s) |
Common RFAM label(s) |
Interface TM-score |
Interface RMSD |
Percentage identity |
Protein TM-score |
RNA TM-score |
Protein coverage |
RNA coverage |
Percentage conservation |
Apolar conservation |
H-bond conservation |
Percentage switching out |
---|---|---|---|---|---|---|---|---|---|---|---|---|
Ribonuclease H-like | 1.0 | 0.24 | 1.00 | 1.0 | 0.85 | 1.0 | 1.0 | 0.97 | 0.94 | 0.79 | 0.43 |
Other pairs involving 6OZP_B_C,D or 6OZS_B_C,D
Total number of entries: 27