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All interfaces > All interologs > Interface groups > group140 > 6OZS_A_C,D

Interface analysis

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

6OZS_A
6OZS_C,D
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:52 [ASP] C:318 [U] 2.84 D:658 [U] 98.72
A:53 [VAL] C:318 [U] 3.46 D:658 [U] 84.2
A:54 [SER] C:318 [U] 4.52 D:658 [U] 88.21
A:54 [SER] C:319 [A] 3.48 D:657 [U] 88.21
A:55 [PHE] C:318 [U] 3.5 D:658 [U] 81.0
A:55 [PHE] C:319 [A] 3.37 D:657 [U] 81.0
A:57 [LYS] C:319 [A] 3.95 D:657 [U] 47.83
A:57 [LYS] C:320 [U] 4.96 D:656 [A] 47.83
A:126 [ASP] C:318 [U] 2.81 D:658 [U] 90.01
A:155 [LYS] C:318 [U] 2.76 D:658 [U] 91.39
A:156 [LYS] C:318 [U] 3.26 D:658 [U] base:SC 77.21
A:156 [LYS] D:658 [U] 3.52 C:318 [U] base:SC 77.21
A:200 [HIS] D:652 [A] 4.88 C:324 [U] 58.6
A:200 [HIS] D:653 [U] 3.05 C:323 [A] 58.6
A:202 [HIS] D:653 [U] 3.35 C:323 [A] 41.09
A:203 [SER] D:653 [U] 3.73 C:323 [A] 71.23
A:203 [SER] D:654 [G] 2.71 C:322 [C] 71.23
A:204 [THR] D:653 [U] 4.16 C:323 [A] 46.3
A:204 [THR] D:654 [G] 2.98 C:322 [C] 46.3
A:205 [LYS] D:654 [G] 2.8 C:322 [C] 73.37
A:205 [LYS] D:655 [C] 3.25 C:321 [G] 73.37
A:230 [PHE] D:651 [C] 4.98 C:325 [G] 57.65
A:230 [PHE] D:652 [A] 3.51 C:324 [U] 57.65
A:230 [PHE] D:653 [U] 3.59 C:323 [A] 57.65
A:231 [ARG] D:652 [A] 4.78 C:324 [U] 83.84
A:231 [ARG] D:653 [U] 2.7 C:323 [A] 83.84
A:231 [ARG] D:654 [G] 3.44 C:322 [C] 83.84
A:237 [ARG] D:651 [C] 3.13 C:325 [G] 81.31
A:237 [ARG] D:652 [A] 2.84 C:324 [U] 81.31
A:240 [ASP] C:318 [U] 3.06 D:658 [U] 89.73
A:240 [ASP] C:319 [A] 4.45 D:657 [U] 89.73
A:241 [ILE] D:651 [C] 3.89 C:325 [G] 25.64
A:241 [ILE] D:652 [A] 4.74 C:324 [U] 25.64
A:244 [ARG] C:319 [A] 3.59 D:657 [U] 74.17
A:244 [ARG] D:650 [G] 4.53 C:326 [C] 74.17
A:244 [ARG] D:651 [C] 2.63 C:325 [G] 74.17
A:248 [ARG] D:649 [U] 4.43 C:327 [A] 57.55
A:248 [ARG] D:650 [G] 3.54 C:326 [C] 57.55
A:248 [ARG] D:651 [C] 4.23 C:325 [G] 57.55

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group140 6OZS_A_C,D A: Endonuclease v, Mus musculus (genetically engineered) C: Synthetic construct (synthetic) D: Synthetic construct (synthetic) Q8C9A2 Ribonuclease H-like ✘

Interologs

Total number of interologs for this interface: 14

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
5JS1_A_B 6OZS_A_C,D 0.58 0.61 2.63 0.0 Ribonuclease H-like compare
4KRF_A_R 6OZS_A_C,D 0.49 0.62 2.57 0.0 Ribonuclease H-like compare
4KXT_A_B 6OZS_A_C,D 0.57 0.59 2.56 0.09 Ribonuclease H-like compare
6OON_A_B 6OZS_A_C,D 0.52 0.61 2.6 0.09 Ribonuclease H-like compare
4OLA_A_B 6OZS_A_C,D 0.57 0.6 2.63 0.1 Ribonuclease H-like compare
6MFN_A_C,E 6OZS_A_C,D 0.59 0.61 2.51 0.1 Ribonuclease H-like compare
4KRE_A_R 6OZS_A_C,D 0.62 0.62 2.57 0.1 Ribonuclease H-like compare
4W5T_A_B,D 6OZS_A_C,D 0.54 0.61 2.93 0.1 Ribonuclease H-like compare
4F3T_A_R 6OZS_A_C,D 0.49 0.61 2.63 0.1 Ribonuclease H-like compare
4Z4D_A_B,D 6OZS_A_C,D 0.58 0.6 2.77 0.15 Ribonuclease H-like compare
4W5O_A_B,D 6OZS_A_C,D 0.44 0.61 2.76 0.15 Ribonuclease H-like compare
6CBD_A_B,C 6OZS_A_C,D 0.43 0.61 2.77 0.15 Ribonuclease H-like compare
6OZP_B_C,D 6OZS_A_C,D 0.96 0.94 0.45 0.73 Ribonuclease H-like compare
6OZP_A_C,D 6OZS_A_C,D 0.99 0.99 0.16 1.0 Ribonuclease H-like compare