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All interfaces > All interologs > Interface groups > group140 > 6OZS_B_C,D

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

6OZS_B
6OZS_C,D
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
B:52 [ASP] D:647 [U] 2.83 C:329 [U] 98.87
B:53 [VAL] D:647 [U] 3.69 C:329 [U] 84.05
B:54 [SER] D:647 [U] 4.6 C:329 [U] 90.63
B:54 [SER] D:648 [A] 3.43 C:328 [U] 90.63
B:55 [PHE] D:647 [U] 3.31 C:329 [U] 83.62
B:55 [PHE] D:648 [A] 3.19 C:328 [U] 83.62
B:56 [VAL] D:648 [A] 4.79 C:328 [U] 36.45
B:57 [LYS] D:648 [A] 3.33 C:328 [U] 58.4
B:57 [LYS] D:649 [U] 4.81 C:327 [A] 58.4
B:100 [GLU] D:647 [U] 4.9 C:329 [U] 98.47
B:126 [ASP] D:647 [U] 2.83 C:329 [U] 93.11
B:155 [LYS] D:647 [U] 2.87 C:329 [U] 92.9
B:156 [LYS] C:329 [U] 4.13 D:647 [U] 75.93
B:156 [LYS] D:647 [U] 2.86 C:329 [U] base:SC 75.93
B:202 [HIS] C:324 [U] 3.4 D:652 [A] 50.5
B:203 [SER] C:324 [U] 3.74 D:652 [A] 66.96
B:203 [SER] C:325 [G] 3.49 D:651 [C] 66.96
B:204 [THR] C:324 [U] 4.14 D:652 [A] 53.45
B:204 [THR] C:325 [G] 3.07 D:651 [C] 53.45
B:205 [LYS] C:325 [G] 2.77 D:651 [C] 79.04
B:205 [LYS] C:326 [C] 3.57 D:650 [G] 79.04
B:230 [PHE] C:322 [C] 5.0 D:654 [G] 60.46
B:230 [PHE] C:323 [A] 3.44 D:653 [U] 60.46
B:230 [PHE] C:324 [U] 3.53 D:652 [A] 60.46
B:231 [ARG] C:323 [A] 4.72 D:653 [U] 84.15
B:231 [ARG] C:324 [U] 2.68 D:652 [A] 84.15
B:231 [ARG] C:325 [G] 3.58 D:651 [C] 84.15
B:232 [ILE] C:324 [U] 4.84 D:652 [A] 68.27
B:237 [ARG] C:322 [C] 3.29 D:654 [G] 82.27
B:237 [ARG] C:323 [A] 3.11 D:653 [U] 82.27
B:240 [ASP] D:647 [U] 3.09 C:329 [U] 91.34
B:240 [ASP] D:648 [A] 4.68 C:328 [U] 91.34
B:241 [ILE] C:322 [C] 3.72 D:654 [G] 44.21
B:241 [ILE] C:323 [A] 4.8 D:653 [U] 44.21
B:244 [ARG] C:321 [G] 4.52 D:655 [C] 76.2
B:244 [ARG] C:322 [C] 2.88 D:654 [G] 76.2
B:244 [ARG] D:648 [A] 3.34 C:328 [U] 76.2
B:248 [ARG] C:320 [U] 3.39 D:656 [A] 55.28
B:248 [ARG] C:321 [G] 3.34 D:655 [C] 55.28

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group140 6OZS_B_C,D B: Endonuclease v, Mus musculus (genetically engineered) C: Synthetic construct (synthetic) D: Synthetic construct (synthetic) Q8C9A2 Ribonuclease H-like ✘

Interologs

Total number of interologs for this interface: 14

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4OLA_A_B 6OZS_B_C,D 0.51 0.6 2.64 0.09 Ribonuclease H-like compare
6OZP_B_C,D 6OZS_B_C,D 0.97 1.0 0.24 1.0 Ribonuclease H-like compare
6MFN_A_C,E 6OZS_B_C,D 0.42 0.63 2.57 0.09 Ribonuclease H-like compare
4KXT_A_B 6OZS_B_C,D 0.51 0.61 2.64 0.09 Ribonuclease H-like compare
6OZP_A_C,D 6OZS_B_C,D 0.94 0.94 0.56 0.73 Ribonuclease H-like compare
4KRE_A_R 6OZS_B_C,D 0.56 0.62 2.54 0.09 Ribonuclease H-like compare
5JS1_A_B 6OZS_B_C,D 0.52 0.61 2.68 0.0 Ribonuclease H-like compare
6OON_A_B 6OZS_B_C,D 0.46 0.61 2.69 0.09 Ribonuclease H-like compare
4Z4D_A_B,D 6OZS_B_C,D 0.49 0.63 2.83 0.14 Ribonuclease H-like compare
4W5O_A_B,D 6OZS_B_C,D 0.49 0.63 2.78 0.14 Ribonuclease H-like compare
4KRF_A_R 6OZS_B_C,D 0.55 0.62 2.59 0.09 Ribonuclease H-like compare
4W5T_A_B,D 6OZS_B_C,D 0.40 0.63 2.8 0.09 Ribonuclease H-like compare
4F3T_A_R 6OZS_B_C,D 0.56 0.61 2.75 0.09 Ribonuclease H-like compare
6CBD_A_B,C 6OZS_B_C,D 0.49 0.63 2.82 0.14 Ribonuclease H-like compare