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All interfaces > All interologs > Interface groups > group141 > 1G2E_A_B

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

1G2E_A
1G2E_B
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:40 [ASN] B:10 [U] 2.83 base:SC 78.72
A:42 [ILE] B:8 [U] 3.53 61.39
A:42 [ILE] B:9 [U] 3.43 61.39
A:44 [ASN] B:8 [U] 2.95 sugar:SC base/AA stacks 55.13
A:45 [TYR] B:5 [U] 3.28 base/AA stacks 80.2
A:45 [TYR] B:7 [A] 3.63 80.2
A:45 [TYR] B:8 [U] 4.21 80.2
A:48 [GLN] B:6 [U] 4.27 6.9
A:48 [GLN] B:7 [A] 2.74 base:SC 6.9
A:69 [LYS] B:10 [U] 3.51 sugar:SC 39.94
A:69 [LYS] B:11 [A] 3.72 39.94
A:71 [VAL] B:10 [U] 3.83 55.43
A:72 [ARG] B:11 [A] 5.0 52.65
A:74 [LYS] B:11 [A] 3.15 56.87
A:79 [SER] B:7 [A] 3.57 87.66
A:80 [LEU] B:7 [A] 3.41 68.51
A:81 [GLY] B:7 [A] 4.0 81.73
A:82 [TYR] B:8 [U] 4.09 61.22
A:82 [TYR] B:9 [U] 3.33 61.22
A:82 [TYR] B:10 [U] 4.68 61.22
A:84 [PHE] B:9 [U] 3.41 84.97
A:84 [PHE] B:10 [U] 3.34 base/AA stacks 84.97
A:107 [THR] B:5 [U] 4.42 53.02
A:108 [LYS] B:5 [U] 2.97 sugar:SC 61.7
A:108 [LYS] B:6 [U] 2.99 61.7
A:108 [LYS] B:7 [A] 4.53 61.7
A:109 [THR] B:5 [U] 2.54 base:BB, base:BB 33.02
A:110 [ILE] B:5 [U] 4.7 62.58
A:111 [LYS] B:5 [U] 4.62 40.49
A:111 [LYS] B:8 [U] 2.56 base:SC 40.49
A:113 [SER] B:8 [U] 4.78 50.85
A:114 [TYR] B:9 [U] 4.22 0.0
A:115 [ALA] B:9 [U] 3.68 81.55
A:115 [ALA] B:10 [U] 4.36 81.55
A:116 [ARG] B:8 [U] 3.0 base:SC 11.22
A:116 [ARG] B:9 [U] 2.8 base:BB, base:BB, base:SC 11.22
A:117 [PRO] B:9 [U] 4.04 44.55
A:118 [SER] B:9 [U] 2.71 sugar:SC 51.75
A:118 [SER] B:10 [U] 3.8 51.75
A:119 [SER] B:9 [U] 3.49 sugar:BB 40.96
A:122 [ILE] B:8 [U] 4.87 3.97
A:122 [ILE] B:9 [U] 3.73 3.97
A:123 [ARG] B:9 [U] 4.05 54.71
A:123 [ARG] B:10 [U] 4.91 54.71
A:124 [ASP] B:9 [U] 4.85 37.62
A:126 [ASN] B:4 [U] 2.95 base:SC 69.8
A:128 [TYR] B:2 [U] 3.67 53.23
A:128 [TYR] B:3 [A] 3.73 base/AA stacks 53.23
A:130 [SER] B:2 [U] 4.3 50.55
A:131 [GLY] B:2 [U] 4.0 84.68
A:152 [ILE] B:8 [U] 3.24 48.38
A:153 [THR] B:8 [U] 4.37 65.59
A:155 [ARG] B:4 [U] 3.77 61.5
A:155 [ARG] B:5 [U] 3.01 61.5
A:157 [LEU] B:2 [U] 4.51 43.89
A:157 [LEU] B:3 [A] 3.78 43.89
A:157 [LEU] B:4 [U] 3.52 43.89
A:157 [LEU] B:5 [U] 3.99 43.89
A:166 [ARG] B:2 [U] 3.19 base:SC, base:BB 68.71
A:166 [ARG] B:3 [A] 3.67 68.71
A:167 [GLY] B:2 [U] 4.32 86.45
A:168 [VAL] B:2 [U] 3.4 49.87
A:170 [PHE] B:3 [A] 3.19 86.09
A:170 [PHE] B:4 [U] 3.4 base/AA stacks 86.09
A:172 [ARG] B:4 [U] 4.64 58.93
A:172 [ARG] B:7 [A] 3.25 58.93
A:172 [ARG] B:8 [U] 2.69 58.93
A:172 [ARG] B:9 [U] 4.53 58.93
A:201 [LYS] B:3 [A] 2.67 base:SC 66.63
A:202 [PHE] B:3 [A] 4.82 51.94
A:203 [ALA] B:3 [A] 3.44 97.84
A:203 [ALA] B:4 [U] 4.99 97.84

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group141 1G2E_A_B A: Paraneoplastic encephalomyelitis antigen hud, Homo sapiens (genetically engineered) B: N/A P26378 RNA-binding domain, RBD ✘

Interologs

Total number of interologs for this interface: 6

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1G2E_A_B 4ED5_A_D 0.92 0.95 0.7 0.8 RNA-binding domain, RBD compare
1G2E_A_B 6F4H_A_B 0.57 0.64 3.02 0.1 RNA-binding domain, RBD compare
1A9N_B_Q 1G2E_A_B 0.54 0.62 3.02 0.16 RNA-binding domain, RBD compare
1G2E_A_B 6F4G_B_C 0.57 0.61 3.03 0.15 RNA-binding domain, RBD compare
1G2E_A_B 1URN_A_P 0.54 0.62 3.07 0.1 RNA-binding domain, RBD compare
1G2E_A_B 6SQN_A_X 0.55 0.64 3.14 0.1 RNA-binding domain, RBD compare