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All interfaces > All interologs > Interface groups > group141 > 5WWF_A_B

Interface analysis

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Protein

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Interface

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Rim - Core

Contacts -

5WWF_A
5WWF_B
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:18 [GLU] B:4 [G] 2.6 base:SC, base:SC 80.94
A:18 [GLU] B:5 [A] 3.13 80.94
A:22 [LYS] B:2 [A] 2.81 base:SC 86.59
A:22 [LYS] B:3 [G] 2.62 base:SC 86.59
A:22 [LYS] B:4 [G] 3.19 86.59
A:24 [PHE] B:1 [A] 3.47 base/AA stacks 77.14
A:49 [ASP] B:3 [G] 2.74 base:SC, base:SC 50.96
A:49 [ASP] B:4 [G] 3.27 base/AA stacks 50.96
A:50 [CYS] B:3 [G] 4.22 71.77
A:51 [VAL] B:3 [G] 3.71 32.83
A:53 [MET] B:2 [A] 3.49 50.51
A:53 [MET] B:3 [G] 3.34 50.51
A:62 [ARG] B:1 [A] 4.98 81.53
A:62 [ARG] B:2 [A] 4.23 81.53
A:62 [ARG] B:3 [G] 3.5 81.53
A:64 [PHE] B:1 [A] 3.62 55.54
A:64 [PHE] B:2 [A] 4.48 55.54
A:66 [PHE] B:1 [A] 4.05 85.34
A:66 [PHE] B:2 [A] 3.23 base/AA stacks 85.34
A:66 [PHE] B:3 [G] 4.54 85.34
A:94 [LYS] B:1 [A] 2.85 base:SC 55.15
A:95 [ARG] B:1 [A] 3.4 base:BB 31.82
A:96 [ALA] B:1 [A] 3.45 54.12
A:96 [ALA] B:2 [A] 4.05 54.12
A:97 [VAL] B:1 [A] 2.94 base:BB 0.18
A:97 [VAL] B:2 [A] 2.71 base:BB 0.18
A:98 [ALA] B:2 [A] 4.16 55.85
A:99 [ARG] B:2 [A] 2.88 sugar:SC base/AA stacks 56.77
A:99 [ARG] B:3 [G] 3.36 base:SC 56.77
A:99 [ARG] B:4 [G] 3.09 base:SC, base:SC 56.77
A:99 [ARG] B:5 [A] 3.23 56.77
A:102 [SER] B:1 [A] 4.34 43.69
A:102 [SER] B:2 [A] 4.23 43.69
A:108 [HIS] B:1 [A] 2.98 base/AA stacks 8.05
A:108 [HIS] B:2 [A] 4.87 8.05

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group141 5WWF_A_B A: Heterogeneous nuclear ribonucleoproteins a2/b1, Homo sapiens (genetically engineered) B: RNA, Synthetic construct (synthetic) P22626 RNA-binding domain, RBD ✘

Interologs

Total number of interologs for this interface: 2

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
5WWE_A_B 5WWF_A_B 0.98 0.88 1.37 0.8 RNA-binding domain, RBD compare
5HO4_A_B 5WWF_A_B 0.87 0.94 0.85 0.4 RNA-binding domain, RBD compare