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All interfaces > All interologs > Interface groups > group141 > 6DCL_A_C

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

6DCL_A
6DCL_C
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:12 [GLN] C:5 [G] 2.94 base:SC 49.22
A:15 [LYS] C:5 [G] 2.83 base:SC, base:SC 77.49
A:17 [PHE] C:3 [U] 3.46 84.16
A:17 [PHE] C:4 [A] 3.31 base/AA stacks 84.16
A:19 [GLY] C:3 [U] 3.67 74.48
A:20 [GLY] C:3 [U] 3.24 sugar:BB 82.58
A:23 [PHE] C:3 [U] 3.85 0.0
A:46 [MET] C:5 [G] 3.65 49.85
A:46 [MET] C:6 [A] 4.07 49.85
A:55 [ARG] C:3 [U] 3.64 83.64
A:55 [ARG] C:4 [A] 4.24 83.64
A:55 [ARG] C:5 [G] 2.72 83.64
A:55 [ARG] C:6 [A] 2.65 83.64
A:56 [GLY] C:3 [U] 3.62 89.5
A:57 [PHE] C:3 [U] 3.94 72.24
A:57 [PHE] C:4 [A] 3.67 72.24
A:57 [PHE] C:5 [G] 3.78 72.24
A:59 [PHE] C:4 [A] 4.07 88.95
A:59 [PHE] C:5 [G] 3.27 base/AA stacks 88.95
A:82 [ARG] C:3 [U] 4.89 66.71
A:85 [GLU] C:3 [U] 2.86 base:SC 33.01
A:87 [LYS] C:3 [U] 3.9 41.22
A:87 [LYS] C:4 [A] 3.89 41.22
A:88 [ARG] C:4 [A] 3.27 base:BB 39.88
A:89 [ALA] C:4 [A] 3.55 69.21
A:89 [ALA] C:5 [G] 4.09 69.21
A:90 [VAL] C:4 [A] 2.96 base:BB 5.11
A:90 [VAL] C:5 [G] 2.84 base:BB 5.11
A:91 [SER] C:5 [G] 3.97 68.15
A:92 [ARG] C:5 [G] 3.11 sugar:SC base/AA stacks 57.43
A:92 [ARG] C:6 [A] 3.04 base:BB 57.43
A:92 [ARG] C:8 [U] 3.44 57.43
A:93 [GLU] C:6 [A] 4.91 11.85
A:93 [GLU] C:8 [U] 4.13 11.85
A:95 [SER] C:4 [A] 4.07 58.81
A:95 [SER] C:5 [G] 3.09 base:SC 58.81
A:95 [SER] C:6 [A] 4.48 58.81
A:96 [GLN] C:6 [A] 3.2 base:SC 12.13
A:101 [HIS] C:4 [A] 3.02 sugar:SC base/AA stacks 7.32

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group141 6DCL_A_C A: Heterogeneous nuclear ribonucleoprotein a1, Homo sapiens (genetically engineered) C: Homo sapiens (synthetic) P09651 RNA-binding domain, RBD ✘

Interologs

Total number of interologs for this interface: 1

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
5HO4_A_B 6DCL_A_C 0.98 0.92 0.75 0.4 RNA-binding domain, RBD compare