Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
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InterfaceRNA
Protein
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Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
| 6DCL_A
|
6DCL_D
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
|---|---|---|---|---|---|---|
| A:106 [LYS] | D:10 [G] | 2.86 | base:SC, base:SC | 72.3 | ||
| A:108 [PHE] | D:8 [U] | 3.79 | 63.6 | |||
| A:108 [PHE] | D:9 [A] | 3.37 | base/AA stacks | 63.6 | ||
| A:110 [GLY] | D:8 [U] | 3.41 | 59.6 | |||
| A:111 [GLY] | D:8 [U] | 3.2 | 73.1 | |||
| A:112 [ILE] | D:7 [U] | 4.77 | 70.3 | |||
| A:112 [ILE] | D:8 [U] | 4.68 | 70.3 | |||
| A:114 [GLU] | D:7 [U] | 2.62 | base:SC | 14.7 | ||
| A:135 [GLU] | D:10 [G] | 4.36 | 7.8 | |||
| A:137 [MET] | D:10 [G] | 3.59 | 45.1 | |||
| A:137 [MET] | D:11 [C] | 4.37 | 45.1 | |||
| A:140 [ARG] | D:11 [C] | 3.08 | 62.5 | |||
| A:144 [LYS] | D:7 [U] | 3.45 | base:SC | 20.6 | ||
| A:145 [LYS] | D:7 [U] | 2.93 | base:BB | 79.7 | ||
| A:146 [ARG] | D:7 [U] | 3.14 | 79.7 | |||
| A:146 [ARG] | D:8 [U] | 3.69 | 79.7 | |||
| A:146 [ARG] | D:9 [A] | 4.76 | 79.7 | |||
| A:146 [ARG] | D:10 [G] | 3.22 | 79.7 | |||
| A:146 [ARG] | D:11 [C] | 2.8 | 79.7 | |||
| A:147 [GLY] | D:7 [U] | 3.95 | 85.4 | |||
| A:147 [GLY] | D:8 [U] | 3.36 | 85.4 | |||
| A:148 [PHE] | D:8 [U] | 4.03 | 75.5 | |||
| A:148 [PHE] | D:9 [A] | 3.59 | 75.5 | |||
| A:148 [PHE] | D:10 [G] | 4.01 | 75.5 | |||
| A:150 [PHE] | D:9 [A] | 3.72 | 92.9 | |||
| A:150 [PHE] | D:10 [G] | 3.39 | base/AA stacks | 92.9 | ||
| A:176 [GLU] | D:8 [U] | 2.62 | base:SC | 21.5 | ||
| A:178 [ARG] | D:8 [U] | 3.05 | base:SC | 70.7 | ||
| A:178 [ARG] | D:9 [A] | 2.98 | base:SC | 70.7 | ||
| A:179 [LYS] | D:9 [A] | 2.97 | base:BB | 20.1 | ||
| A:180 [ALA] | D:9 [A] | 3.25 | 97.3 | |||
| A:180 [ALA] | D:10 [G] | 4.06 | 97.3 | |||
| A:181 [LEU] | D:9 [A] | 2.76 | base:BB | 49.4 | ||
| A:181 [LEU] | D:10 [G] | 2.42 | base:BB, base:BB | 49.4 | ||
| A:182 [SER] | D:10 [G] | 3.3 | 60.3 | |||
| A:183 [LYS] | D:10 [G] | 3.19 | 85.9 | |||
| A:186 [MET] | D:9 [A] | 3.24 | 71.2 | |||
| A:186 [MET] | D:10 [G] | 3.58 | 71.2 |
Export the table of contacts
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
| Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
|---|---|---|---|---|---|---|---|
| group141 | 6DCL_A_D | A: Heterogeneous nuclear ribonucleoprotein a1, Homo sapiens (genetically engineered) D: Homo sapiens (synthetic) | P09651 | RNA-binding domain, RBD | ✘ |
|
Interologs
Total number of interologs for this interface: 7
| Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
|---|---|---|---|---|---|---|---|---|
| 6CMN_A_D | 6DCL_A_D | 0.48 | 0.61 | 1.72 | 0.16 | RNA-binding domain, RBD | compare | |
| 6DCL_A_D | 6F4H_A_B | 0.33 | 0.63 | 1.94 | 0.17 | RNA-binding domain, RBD | compare | |
| 1URN_A_P | 6DCL_A_D | 0.33 | 0.61 | 1.95 | 0.17 | RNA-binding domain, RBD | compare | |
| 6DCL_A_D | 6SQN_A_X | 0.28 | 0.63 | 1.96 | 0.13 | RNA-binding domain, RBD | compare | |
| 6DCL_A_D | 6XH2_A_D | 0.48 | 0.6 | 1.96 | 0.14 | RNA-binding domain, RBD | compare | |
| 1A9N_B_Q | 6DCL_A_D | 0.32 | 0.6 | 2.71 | 0.2 | RNA-binding domain, RBD | compare | |
| 6DCL_A_D | 6F4G_B_C | 0.32 | 0.61 | 2.78 | 0.26 | RNA-binding domain, RBD | compare |