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All interfaces > All interologs > Interface groups > group141 > 6XH3_A_D

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

6XH3_A
6XH3_D
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:13 [TYR] D:35 [A] 3.09 base/AA stacks 80.98
A:15 [ASN] D:35 [A] 3.8 60.02
A:19 [SER] D:24 [C] 4.07 42.4
A:20 [LYS] D:24 [C] 2.9 51.49
A:21 [ILE] D:24 [C] 4.87 62.14
A:22 [LYS] D:25 [U] 4.0 base:SC 52.82
A:23 [LYS] D:21 [G] 4.38 D:41 [C] 44.92
A:23 [LYS] D:22 [A] 3.09 D:40 [U] 44.92
A:47 [ARG] D:22 [A] 3.61 D:40 [U] base/AA stacks 52.4
A:47 [ARG] D:23 [U] 2.92 sugar:SC base/AA stacks 52.4
A:47 [ARG] D:26 [G] 3.0 D:39 [C] base:SC, base:SC 52.4
A:48 [THR] D:23 [U] 3.53 70.11
A:49 [ARG] D:23 [U] 3.47 51.43
A:49 [ARG] D:27 [A] 3.12 D:38 [U] base/AA stacks 51.43
A:49 [ARG] D:28 [G] 2.76 D:37 [C] base:SC, base:SC 51.43
A:49 [ARG] D:29 [C] 4.08 D:36 [G] 51.43
A:49 [ARG] D:36 [G] 3.9 D:29 [C] 51.43
A:49 [ARG] D:37 [C] 3.87 D:28 [G] 51.43
A:49 [ARG] D:38 [U] 4.21 D:27 [A] 51.43
A:50 [ARG] D:29 [C] 4.61 D:36 [G] 52.37
A:50 [ARG] D:30 [C] 4.5 D:34 [G] 52.37
A:50 [ARG] D:34 [G] 3.2 D:30 [C] base/AA stacks 52.37
A:50 [ARG] D:36 [G] 2.94 D:29 [C] base:SC, base:SC 52.37
A:51 [PRO] D:24 [C] 3.58 63.91
A:52 [ARG] D:22 [A] 3.3 D:40 [U] 73.63
A:52 [ARG] D:23 [U] 2.5 73.63
A:54 [GLN] D:34 [G] 4.91 D:30 [C] 85.75
A:54 [GLN] D:35 [A] 3.55 85.75
A:54 [GLN] D:36 [G] 4.96 D:29 [C] 85.75
A:56 [PHE] D:35 [A] 3.77 85.92
A:85 [GLN] D:35 [A] 3.22 base:SC 27.58
A:86 [TYR] D:35 [A] 3.03 base:BB 42.43
A:87 [ALA] D:35 [A] 3.43 91.39
A:88 [LYS] D:35 [A] 2.74 base:BB, sugar:SC 39.48

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group141 6XH3_A_D A: Tar binding protein tbp 6.3, Homo sapiens (genetically engineered) D: Trans-activation response element, Human immunodeficiency virus 1 (synthetic) P09012 RNA-binding domain, RBD ✘

Interologs

Total number of interologs for this interface: 3

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6XH2_A_D 6XH3_A_D 0.81 0.98 1.26 0.89 RNA-binding domain, RBD compare
6XH3_A_D 7DCO_X_G 0.50 0.63 1.21 0.0 RNA-binding domain, RBD compare
6CMN_A_D 6XH3_A_D 0.80 0.97 1.27 0.84 RNA-binding domain, RBD compare