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All interfaces > All interologs > Interface groups > group141 > 7DCO_p_H

Interface analysis

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Protein

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Interface

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Rim - Core

Contacts -

7DCO_p
7DCO_H
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
p:38 [LYS] H:1100 [A] 4.15 H:1140 [U] 60.58
p:38 [LYS] H:1102 [C] 4.65 H:1139 [G] 60.58
p:38 [LYS] H:1138 [G] 3.33 H:1103 [C] 60.58
p:40 [ASN] H:1097 [G] 4.73 H:1143 [C] 55.91
p:40 [ASN] H:1098 [C] 3.89 H:1142 [G] 55.91
p:41 [MET] H:1138 [G] 4.26 H:1103 [C] 40.69
p:64 [ASN] H:1138 [G] 3.9 H:1103 [C] 20.81
p:66 [LYS] H:1106 [G] 2.62 sugar:BB 31.38
p:67 [LYS] H:1106 [G] 3.32 47.71
p:68 [GLN] H:1106 [G] 4.68 73.2
p:69 [ARG] H:1104 [U] 4.88 82.84
p:69 [ARG] H:1106 [G] 3.16 82.84

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group141 7DCO_p_H p: Bj4_g0027490.mRNA.1.cds.1, Saccharomyces cerevisiae (natural) H: U2 snRNA, Saccharomyces cerevisiae (natural) A0A6A5Q318 RNA-binding domain, RBD ✘

Interologs

Total number of interologs for this interface: 2

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1A9N_B_Q 7DCO_p_H 0.32 0.68 0.46 0.29 RNA-binding domain, RBD compare
6F4G_B_C 7DCO_p_H 0.23 0.65 0.62 0.14 RNA-binding domain, RBD compare