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All interfaces > All interologs > Interface groups > group15 > 4Y4O_1y_1a vs 6S0X_v_a

Interface analysis


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Common contacts -

4Y4O_1y
4Y4O_1a
6S0X_v
6S0X_a
Conserved?
1y:89 [GLN] 1a:790 [A] v:93 [LYS] a:798 [A] ✔
1y:2 [THR] 1a:1230 [C] v:3 [ARG] a:1240 [C] ✔
1y:96 [ARG] 1a:693 [G] v:100 [SER] a:701 [G] ✔
1y:84 [GLN] 1a:1400 [5MC] v:88 [GLN] a:1410 [C] ✔
1y:79 [ASN] 1a:1498 [UR3] v:83 [ASN] a:1509 [U] ✔
1y:63 [ALA] 1a:1400 [5MC] v:66 [ARG] a:1410 [C] ✔
1y:93 [GLU] 1a:789 [U] v:97 [ASN] a:797 [U] ✔
1y:91 [LYS] 1a:926 [G] v:95 [ARG] a:935 [G] ✔
1y:90 [HIS] 1a:790 [A] v:94 [THR] a:798 [A] ✔
1y:90 [HIS] 1a:791 [G] v:94 [THR] a:799 [G] ✔
1y:90 [HIS] 1a:926 [G] v:94 [THR] a:935 [G] ✔
1y:45 [PRO] 1a:530 [G] v:49 [ASN] a:538 [G] ✔
1y:45 [PRO] 1a:531 [U] v:49 [ASN] a:539 [U] ✔
1y:8 [LYS] 1a:964 [A] v:9 [ASP] a:973 [A] ✔
1y:87 [LYS] 1a:926 [G] v:91 [LYS] a:935 [G] ✔
1y:6 [THR] 1a:965 [A] v:7 [HIS] a:974 [A] ✔
1y:97 [ALA] 1a:693 [G] v:101 [ARG] a:701 [G] ✔
1y:98 [ALA] 1a:693 [G] v:102 [ASP] a:701 [G] ✔
1y:83 [ARG] 1a:1401 [G] v:87 [ARG] a:1411 [G] ✔
1y:83 [ARG] 1a:1501 [C] v:87 [ARG] a:1512 [C] ✔
1y:83 [ARG] 1a:1504 [G] v:87 [ARG] a:1515 [G] ✔
1y:94 [ALA] 1a:926 [G] v:98 [ARG] a:935 [G] ✔
1y:94 [ALA] 1a:1505 [G] v:98 [ARG] a:1516 [G] ✔
1y:72 [THR] 1a:1494 [G] v:76 [ALA] a:1505 [G] ✔
1y:80 [LYS] 1a:1400 [5MC] v:84 [LYS] a:1410 [C] ✔
1y:80 [LYS] 1a:1401 [G] v:84 [LYS] a:1411 [G] ✔
1y:86 [ASN] 1a:790 [A] v:90 [ARG] a:798 [A] ✔
1y:86 [ASN] 1a:791 [G] v:90 [ARG] a:799 [G] ✔
1y:62 [VAL] 1a:966 [M2G] v:65 [LEU] a:975 [G] ✔
1y:53 [THR] 1a:966 [M2G] v:57 [THR] a:975 [G] ✔
1y:46 [GLN] 1a:530 [G] v:50 [SER] a:538 [G] ✔
1y:38 [HIS] 1a:965 [A] v:41 [HIS] a:974 [A] ✔
1y:29 [LYS] 1a:790 [A] v:31 [TYR] a:798 [A] ✔
1y:64 [SER] 1a:1400 [5MC] v:67 [ALA] a:1410 [C] ✔
1y:56 [THR] 1a:1340 [A] v:60 [LEU] a:1350 [A] ❌ 6S0X_v_a
1y:56 [THR] 1a:1341 [U] v:60 [LEU] a:1351 [U] ❌ 6S0X_v_a
1y:89 [GLN] 1a:789 [U] v:93 [LYS] a:797 [U] ❌ 6S0X_v_a
1y:96 [ARG] 1a:788 [U] v:100 [SER] a:796 [U] ❌ 6S0X_v_a
1y:96 [ARG] 1a:789 [U] v:100 [SER] a:797 [U] ❌ 6S0X_v_a
1y:75 [ASN] 1a:1494 [G] v:79 [ASP] a:1505 [G] ❌ 6S0X_v_a
1y:93 [GLU] 1a:788 [U] v:97 [ASN] a:796 [U] ❌ 6S0X_v_a
1y:91 [LYS] 1a:1383 [C] v:95 [ARG] a:1393 [C] ❌ 6S0X_v_a
1y:90 [HIS] 1a:789 [U] v:94 [THR] a:797 [U] ❌ 6S0X_v_a
1y:23 [ARG] 1a:1494 [G] v:24 [LYS] a:1505 [G] ❌ 6S0X_v_a
1y:23 [ARG] 1a:1495 [U] v:24 [LYS] a:1506 [U] ❌ 6S0X_v_a
1y:45 [PRO] 1a:1054 [C] v:49 [ASN] a:1065 [C] ❌ 6S0X_v_a
1y:9 [GLN] 1a:963 [G] v:10 [ASN] a:972 [G] ❌ 6S0X_v_a
1y:9 [GLN] 1a:964 [A] v:10 [ASN] a:973 [A] ❌ 6S0X_v_a
1y:8 [LYS] 1a:965 [A] v:9 [ASP] a:974 [A] ❌ 6S0X_v_a
1y:87 [LYS] 1a:1399 [C] v:91 [LYS] a:1409 [C] ❌ 6S0X_v_a
1y:87 [LYS] 1a:1400 [5MC] v:91 [LYS] a:1410 [C] ❌ 6S0X_v_a
1y:83 [ARG] 1a:1399 [C] v:87 [ARG] a:1409 [C] ❌ 6S0X_v_a
1y:83 [ARG] 1a:1400 [5MC] v:87 [ARG] a:1410 [C] ❌ 6S0X_v_a
1y:83 [ARG] 1a:1402 [4OC] v:87 [ARG] a:1412 [C] ❌ 6S0X_v_a
1y:40 [ILE] 1a:965 [A] v:43 [LYS] a:974 [A] ❌ 6S0X_v_a
1y:4 [ASN] 1a:1230 [C] v:5 [GLU] a:1240 [C] ❌ 6S0X_v_a
1y:86 [ASN] 1a:1498 [UR3] v:90 [ARG] a:1509 [U] ❌ 6S0X_v_a
1y:62 [VAL] 1a:1400 [5MC] v:65 [LEU] a:1410 [C] ❌ 6S0X_v_a
1y:46 [GLN] 1a:1054 [C] v:50 [SER] a:1065 [C] ❌ 6S0X_v_a
1y:38 [HIS] 1a:969 [A] v:41 [HIS] a:978 [A] ❌ 6S0X_v_a
1y:29 [LYS] 1a:1497 [G] v:31 [TYR] a:1508 [G] ❌ 6S0X_v_a
1y:95 [ARG] 1a:926 [G] v:99 [LYS] a:935 [G] ❌ 6S0X_v_a
1y:55 [ASN] 1a:1340 [A] v:59 [PRO] a:1350 [A] ❌ 6S0X_v_a
1y:55 [ASN] 1a:1341 [U] v:59 [PRO] a:1351 [U] ❌ 6S0X_v_a
1y:23 [ARG] 1a:1496 [C] v:24 [LYS] a:1507 [C] ❌ 4Y4O_1y_1a
1y:38 [HIS] 1a:966 [M2G] v:41 [HIS] a:975 [G] ❌ 4Y4O_1y_1a
1y:40 [ILE] 1a:966 [M2G] v:43 [LYS] a:975 [G] ❌ 4Y4O_1y_1a
1y:4 [ASN] 1a:966 [M2G] v:5 [GLU] a:975 [G] ❌ 4Y4O_1y_1a
1y:4 [ASN] 1a:969 [A] v:5 [GLU] a:978 [A] ❌ 4Y4O_1y_1a
1y:55 [ASN] 1a:966 [M2G] v:59 [PRO] a:975 [G] ❌ 4Y4O_1y_1a
1y:5 [ILE] 1a:965 [A] v:6 [ILE] a:974 [A] ❌ 4Y4O_1y_1a
1y:56 [THR] 1a:966 [M2G] v:60 [LEU] a:975 [G] ❌ 4Y4O_1y_1a
1y:63 [ALA] 1a:966 [M2G] v:66 [ARG] a:975 [G] ❌ 4Y4O_1y_1a
1y:6 [THR] 1a:966 [M2G] v:7 [HIS] a:975 [G] ❌ 4Y4O_1y_1a
1y:72 [THR] 1a:1495 [U] v:76 [ALA] a:1506 [U] ❌ 4Y4O_1y_1a
1y:75 [ASN] 1a:1495 [U] v:79 [ASP] a:1506 [U] ❌ 4Y4O_1y_1a
1y:75 [ASN] 1a:1498 [UR3] v:79 [ASP] a:1509 [U] ❌ 4Y4O_1y_1a
1y:75 [ASN] 1a:1496 [C] v:79 [ASP] a:1507 [C] ❌ 4Y4O_1y_1a
1y:79 [ASN] 1a:1402 [4OC] v:83 [ASN] a:1412 [C] ❌ 4Y4O_1y_1a
1y:80 [LYS] 1a:1399 [C] v:84 [LYS] a:1409 [C] ❌ 4Y4O_1y_1a
1y:80 [LYS] 1a:1402 [4OC] v:84 [LYS] a:1412 [C] ❌ 4Y4O_1y_1a
1y:83 [ARG] 1a:1498 [UR3] v:87 [ARG] a:1509 [U] ❌ 4Y4O_1y_1a
1y:83 [ARG] 1a:1505 [G] v:87 [ARG] a:1516 [G] ❌ 4Y4O_1y_1a
1y:83 [ARG] 1a:926 [G] v:87 [ARG] a:935 [G] ❌ 4Y4O_1y_1a
1y:8 [LYS] 1a:963 [G] v:9 [ASP] a:972 [G] ❌ 4Y4O_1y_1a
1y:90 [HIS] 1a:1505 [G] v:94 [THR] a:1516 [G] ❌ 4Y4O_1y_1a
1y:93 [GLU] 1a:790 [A] v:97 [ASN] a:798 [A] ❌ 4Y4O_1y_1a
1y:93 [GLU] 1a:791 [G] v:97 [ASN] a:799 [G] ❌ 4Y4O_1y_1a
1y:95 [ARG] 1a:788 [U] v:99 [LYS] a:796 [U] ❌ 4Y4O_1y_1a
1y:95 [ARG] 1a:789 [U] v:99 [LYS] a:797 [U] ❌ 4Y4O_1y_1a
1y:95 [ARG] 1a:693 [G] v:99 [LYS] a:701 [G] ❌ 4Y4O_1y_1a
1y:2 [THR] 1a:1229 [A] v:3 [ARG] a:1239 [A] ❌ 6S0X_a:1239 no longer at interface
1y:69 [ASP] 1a:1493 [A] v:72 [ASP] a:1504 [A] ❌ 6S0X_v:72, 6S0X_a:1504 no longer at interface
1y:7 [SER] 1a:953 [G] v:8 [GLY] a:962 [G] ❌ 6S0X_v:8, 6S0X_a:962 no longer at interface
1y:7 [SER] 1a:954 [G] v:8 [GLY] a:963 [G] ❌ 6S0X_v:8, 6S0X_a:963 no longer at interface
1y:5 [ILE] 1a:953 [G] v:6 [ILE] a:962 [G] ❌ 6S0X_a:962 no longer at interface
1y:5 [ILE] 1a:954 [G] v:6 [ILE] a:963 [G] ❌ 6S0X_a:963 no longer at interface
1y:33 [HIS] 1a:1338 [G] v:36 [PRO] a:1348 [G] ❌ 6S0X_v:36, 6S0X_a:1348 no longer at interface
1y:33 [HIS] 1a:1339 [A] v:36 [PRO] a:1349 [A] ❌ 6S0X_v:36, 6S0X_a:1349 no longer at interface
1y:75 [ASN] 1a:1493 [A] v:79 [ASP] a:1504 [A] ❌ 6S0X_a:1504 no longer at interface
1y:35 [ILE] 1a:1339 [A] v:38 [ALA] a:1349 [A] ❌ 6S0X_v:38, 6S0X_a:1349 no longer at interface
1y:6 [THR] 1a:953 [G] v:7 [HIS] a:962 [G] ❌ 6S0X_a:962 no longer at interface
1y:6 [THR] 1a:954 [G] v:7 [HIS] a:963 [G] ❌ 6S0X_a:963 no longer at interface
1y:67 [HIS] 1a:1493 [A] v:70 [ARG] a:1504 [A] ❌ 6S0X_v:70, 6S0X_a:1504 no longer at interface
1y:4 [ASN] 1a:953 [G] v:5 [GLU] a:962 [G] ❌ 6S0X_a:962 no longer at interface
1y:4 [ASN] 1a:1229 [A] v:5 [GLU] a:1239 [A] ❌ 6S0X_a:1239 no longer at interface
1y:72 [THR] 1a:1493 [A] v:76 [ALA] a:1504 [A] ❌ 6S0X_a:1504 no longer at interface
1y:17 [ARG] 1a:953 [G] v:18 [ARG] a:962 [G] ❌ 6S0X_v:18, 6S0X_a:962 no longer at interface
1y:17 [ARG] 1a:954 [G] v:18 [ARG] a:963 [G] ❌ 6S0X_v:18, 6S0X_a:963 no longer at interface
1y:17 [ARG] 1a:955 [U] v:18 [ARG] a:964 [U] ❌ 6S0X_v:18, 6S0X_a:964 no longer at interface
1y:14 [PRO] 1a:955 [U] v:15 [ASP] a:964 [U] ❌ 6S0X_v:15, 6S0X_a:964 no longer at interface
1y:11 [GLU] 1a:955 [U] v:12 [THR] a:964 [U] ❌ 6S0X_v:12, 6S0X_a:964 no longer at interface
1y:3 [MET] 1a:1229 [A] v:4 [PHE] a:1239 [A] ❌ 6S0X_v:4, 6S0X_a:1239 no longer at interface
1y:95 [ARG] 1a:927 [G] v:99 [LYS] a:936 [G] ❌ 6S0X_a:936 no longer at interface
1y:95 [ARG] 1a:928 [G] v:99 [LYS] a:937 [G] ❌ 6S0X_a:937 no longer at interface
1y:95 [ARG] 1a:1503 [A] v:99 [LYS] a:1514 [A] ❌ 6S0X_a:1514 no longer at interface
1y:9 [GLN] 1a:1052 [U] v:10 [ASN] a:1063 [U] ❌ 4Y4O_1a:1052 no longer at interface
1y:9 [GLN] 1a:1053 [G] v:10 [ASN] a:1064 [G] ❌ 4Y4O_1a:1053 no longer at interface
1y:96 [ARG] 1a:795 [C] v:100 [SER] a:803 [C] ❌ 4Y4O_1a:795 no longer at interface
1y:42 [SER] 1a:1198 [G] v:45 [LYS] a:1208 [A] ❌ 4Y4O_1y:42, 4Y4O_1a:1198 no longer at interface
1y:44 [GLU] 1a:1196 [U] v:47 [TYR] a:1206 [A] ❌ 4Y4O_1y:44, 4Y4O_1a:1196 no longer at interface
1y:45 [PRO] 1a:517 [G] v:49 [ASN] a:525 [G] ❌ 4Y4O_1a:517 no longer at interface
1y:49 [VAL] 1a:1196 [U] v:53 [LYS] a:1206 [A] ❌ 4Y4O_1y:49, 4Y4O_1a:1196 no longer at interface
1y:59 [GLY] 1a:1384 [C] v:62 [ASN] a:1394 [C] ❌ 4Y4O_1y:59, 4Y4O_1a:1384 no longer at interface
1y:59 [GLY] 1a:1385 [G] v:62 [ASN] a:1395 [G] ❌ 4Y4O_1y:59, 4Y4O_1a:1385 no longer at interface
1y:76 [GLU] 1a:1403 [C] v:80 [LEU] a:1413 [C] ❌ 4Y4O_1y:76, 4Y4O_1a:1403 no longer at interface
1y:79 [ASN] 1a:1403 [C] v:83 [ASN] a:1413 [C] ❌ 4Y4O_1a:1403 no longer at interface
1y:83 [ARG] 1a:1499 [A] v:87 [ARG] a:1510 [A] ❌ 4Y4O_1a:1499 no longer at interface
1y:8 [LYS] 1a:1053 [G] v:9 [ASP] a:1064 [G] ❌ 4Y4O_1a:1053 no longer at interface
1y:90 [HIS] 1a:1506 [U] v:94 [THR] a:1517 [U] ❌ 4Y4O_1a:1506 no longer at interface
1y:94 [ALA] 1a:1506 [U] v:98 [ARG] a:1517 [U] ❌ 4Y4O_1a:1506 no longer at interface
1y:68 [GLU] 1a:530 [G] v:71 [ASN] a:538 [G] ❌ 6S0X_v:71 no longer at interface
1y:26 [LYS] 1a:1495 [U] v:28 [LEU] a:1506 [U] ❌ 6S0X_v:28 no longer at interface
1y:26 [LYS] 1a:1496 [C] v:28 [LEU] a:1507 [C] ❌ 6S0X_v:28 no longer at interface
1y:30 [TRP] 1a:790 [A] v:32 [PHE] a:798 [A] ❌ 6S0X_v:32 no longer at interface
1y:51 [ASP] 1a:965 [A] v:55 [GLU] a:974 [A] ❌ 6S0X_v:55 no longer at interface
1y:51 [ASP] 1a:966 [M2G] v:55 [GLU] a:975 [G] ❌ 6S0X_v:55 no longer at interface
1y:35 [ILE] 1a:1340 [A] v:38 [ALA] a:1350 [A] ❌ 6S0X_v:38 no longer at interface
1y:31 [GLN] 1a:790 [A] v:33 [ASN] a:798 [A] ❌ 6S0X_v:33 no longer at interface
1y:60 [VAL] 1a:966 [M2G] v:63 [VAL] a:975 [G] ❌ 6S0X_v:63 no longer at interface
1y:36 [ASN] 1a:1230 [C] v:39 [VAL] a:1240 [C] ❌ 6S0X_v:39 no longer at interface
1y:19 [HIS] 1a:1495 [U] v:20 [TYR] a:1506 [U] ❌ 4Y4O_1y:19 no longer at interface
1y:19 [HIS] 1a:1496 [C] v:20 [TYR] a:1507 [C] ❌ 4Y4O_1y:19 no longer at interface
1y:32 [THR] 1a:790 [A] v:34 [ASP] a:798 [A] ❌ 4Y4O_1y:32 no longer at interface
1y:32 [THR] 1a:789 [U] v:34 [ASP] a:797 [U] ❌ 4Y4O_1y:32 no longer at interface
1y:34 [LEU] 1a:1341 [U] v:37 [ASN] a:1351 [U] ❌ 4Y4O_1y:34 no longer at interface
1y:42 [SER] 1a:1054 [C] v:45 [LYS] a:1065 [C] ❌ 4Y4O_1y:42 no longer at interface
1y:44 [GLU] 1a:1054 [C] v:47 [TYR] a:1065 [C] ❌ 4Y4O_1y:44 no longer at interface
1y:54 [ILE] 1a:966 [M2G] v:58 [ILE] a:975 [G] ❌ 4Y4O_1y:54 no longer at interface
1y:58 [ASN] 1a:1341 [U] v:61 [LYS] a:1351 [U] ❌ 4Y4O_1y:58 no longer at interface
1y:58 [ASN] 1a:1340 [A] v:61 [LYS] a:1350 [A] ❌ 4Y4O_1y:58 no longer at interface
1y:59 [GLY] 1a:1383 [C] v:62 [ASN] a:1393 [C] ❌ 4Y4O_1y:59 no longer at interface
1y:61 [LEU] 1a:966 [M2G] v:64 [THR] a:975 [G] ❌ 4Y4O_1y:61 no longer at interface
1y:65 [GLY] 1a:1400 [5MC] v:68 [GLU] a:1410 [C] ❌ 4Y4O_1y:65 no longer at interface
1y:66 [LYS] 1a:1400 [5MC] v:69 [GLU] a:1410 [C] ❌ 4Y4O_1y:66 no longer at interface
1y:71 [TYR] 1a:1495 [U] v:75 [TYR] a:1506 [U] ❌ 4Y4O_1y:71 no longer at interface
1y:76 [GLU] 1a:1402 [4OC] v:80 [LEU] a:1412 [C] ❌ 4Y4O_1y:76 no longer at interface
1y:76 [GLU] 1a:1401 [G] v:80 [LEU] a:1411 [G] ❌ 4Y4O_1y:76 no longer at interface
1y:77 [LEU] 1a:1400 [5MC] v:81 [ILE] a:1410 [C] ❌ 4Y4O_1y:77 no longer at interface
1y:82 [GLU] 1a:1498 [UR3] v:86 [GLU] a:1509 [U] ❌ 4Y4O_1y:82 no longer at interface
1y:82 [GLU] 1a:1497 [G] v:86 [GLU] a:1508 [G] ❌ 4Y4O_1y:82 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
Ribosome binding protein Y (YfiA homologue) Bacterial small subunit ribosomal RNA 0.95 3.3 0.16 0.66 0.95 0.69 0.73 0.32 0.25 0.07 0.55


Other pairs involving 4Y4O_1y_1a or 6S0X_v_a

Total number of entries: 1

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1y_1a 6S0X_v_a 0.32 0.95 3.3 0.16 Ribosome binding protein Y (YfiA homologue) Bacterial small subunit ribosomal RNA compare