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All interfaces > All interologs > Interface groups > group16 > 7OF0_J_A

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Licorice
Surface

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Licorice
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Chain
Chain (with hetatm)
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Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

7OF0_J
7OF0_A
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
J:19 [VAL] A:2169 [A] 4.86 20.49
J:21 [ARG] A:2169 [A] 3.93 68.63
J:21 [ARG] A:2170 [G] 2.27 A:2190 [C] 68.63
J:21 [ARG] A:2171 [U] 3.31 68.63
J:21 [ARG] A:2172 [A] 2.3 68.63
J:23 [ILE] A:2171 [U] 4.82 10.13
J:23 [ILE] A:2172 [A] 4.77 10.13
J:34 [PRO] A:2172 [A] 4.86 77.61
J:41 [GLN] A:2207 [A] 3.1 A:2204 [U] base:SC 62.86
J:42 [ARG] A:2208 [A] 3.64 A:2203 [G] sugar:SC 25.16
J:67 [PRO] A:2171 [U] 3.5 63.36
J:69 [LYS] A:2169 [A] 3.97 16.54
J:87 [VAL] A:2171 [U] 3.3 66.61
J:88 [SER] A:2173 [G] 4.93 A:2187 [C] 80.13
J:88 [SER] A:2174 [G] 4.7 A:2186 [C] 80.13
J:99 [LYS] A:2175 [C] 4.08 66.7
J:99 [LYS] A:2176 [C] 3.21 A:2185 [G] 66.7
J:100 [GLY] A:2174 [G] 4.84 A:2186 [C] 70.97
J:100 [GLY] A:2175 [C] 4.54 70.97
J:101 [ALA] A:2174 [G] 4.8 A:2186 [C] 75.09
J:101 [ALA] A:2175 [C] 4.36 75.09
J:102 [ARG] A:2174 [G] 4.33 A:2186 [C] 34.92
J:102 [ARG] A:2175 [C] 2.69 base:SC, sugar:SC 34.92
J:102 [ARG] A:2176 [C] 4.86 A:2185 [G] 34.92
J:102 [ARG] A:2185 [G] 4.45 A:2176 [C] 34.92
J:103 [GLN] A:2187 [C] 3.63 A:2173 [G] sugar:BB 0.18
J:104 [THR] A:2173 [G] 4.84 A:2187 [C] 39.15
J:104 [THR] A:2187 [C] 4.04 A:2173 [G] 39.15
J:104 [THR] A:2188 [A] 4.87 39.15
J:105 [GLY] A:2187 [C] 4.97 A:2173 [G] 38.59
J:129 [ALA] A:2169 [A] 4.47 43.58
J:129 [ALA] A:2170 [G] 4.88 A:2190 [C] 43.58
J:130 [PHE] A:2169 [A] 4.09 2.18
J:130 [PHE] A:2170 [G] 3.14 A:2190 [C] 2.18
J:130 [PHE] A:2171 [U] 3.3 2.18
J:131 [ALA] A:2169 [A] 4.07 8.18
J:132 [LEU] A:2170 [G] 4.08 A:2190 [C] 50.88
J:134 [ASP] A:2192 [A] 3.06 A:2168 [U] sugar:SC 48.23
J:139 [SER] A:2191 [A] 4.69 48.55
J:139 [SER] A:2192 [A] 3.55 A:2168 [U] 48.55
J:139 [SER] A:2193 [U] 4.4 48.55
J:142 [ARG] A:2190 [C] 4.98 A:2170 [G] 61.0
J:142 [ARG] A:2191 [A] 4.11 61.0
J:143 [SER] A:2170 [G] 4.59 A:2190 [C] 59.67
J:143 [SER] A:2191 [A] 2.79 sugar:SC 59.67
J:146 [GLY] A:2190 [C] 3.98 A:2170 [G] 72.82
J:147 [SER] A:2170 [G] 4.24 A:2190 [C] 80.46
J:147 [SER] A:2171 [U] 3.53 base:SC 80.46
J:149 [ARG] A:2188 [A] 4.7 52.8
J:150 [SER] A:2173 [G] 4.96 A:2187 [C] 86.92
J:150 [SER] A:2188 [A] 4.14 86.92
J:150 [SER] A:2198 [A] 4.44 86.92
J:151 [LEU] A:2174 [G] 4.3 A:2186 [C] 72.35

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group16 7OF0_J_A J: 39s ribosomal protein l11, mitochondrial, Homo sapiens (natural) A: 16s ribosomal RNA, Homo sapiens (natural) Q9Y3B7 Ribosomal protein L11, C-terminal domain & Ribosomal protein L11/L12e N-terminal domain Bacterial large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 1

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4YBB_DJ_DA 7OF0_J_A 0.26 0.95 5.35 0.07 Ribosomal protein L11, C-terminal domain & Ribosomal protein L11/L12e N-terminal domain Bacterial large subunit ribosomal RNA compare