Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
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InterfaceRNA
Protein
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Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
| 4YBB_DW
|
4YBB_DA
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
|---|---|---|---|---|---|---|
| DW:45 [ASP] | DA:1038 [G] | 4.43 | DA:1117 [C] | 54.5 | ||
| DW:45 [ASP] | DA:1039 [A] | 3.44 | DA:1116 [G] | 54.5 | ||
| DW:46 [LYS] | DA:1039 [A] | 3.39 | DA:1116 [G] | 60.7 | ||
| DW:46 [LYS] | DA:1040 [A] | 2.93 | DA:1115 [G] | 60.7 | ||
| DW:49 [ASN] | DA:1039 [A] | 3.73 | DA:1116 [G] | sugar:SC | 48.7 | |
| DW:49 [ASN] | DA:1040 [A] | 3.97 | DA:1115 [G] | 48.7 | ||
| DW:83 [LYS] | DA:1118 [C] | 4.85 | DA:1037 [G] | 80.3 | ||
| DW:83 [LYS] | DA:1119 [U] | 2.57 | DA:1036 [G] | 80.3 | ||
| DW:84 [PRO] | DA:1117 [C] | 4.02 | DA:1038 [G] | 66.4 | ||
| DW:84 [PRO] | DA:1118 [C] | 3.67 | DA:1037 [G] | 66.4 | ||
| DW:85 [LYS] | DA:1118 [C] | 4.11 | DA:1037 [G] | 40.5 | ||
| DW:85 [LYS] | DA:1119 [U] | 4.18 | DA:1036 [G] | 40.5 |
Export the table of contacts
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
| Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
|---|---|---|---|---|---|---|---|
| group17 | 4YBB_DW_DA | DW: 50s ribosomal protein l25, Escherichia coli (strain k12) (natural) DA: 23s rRNA, Escherichia coli k-12 (natural) | P68919 | Ribosomal protein L25-like | Bacterial large subunit ribosomal RNA | ✔ |
|
Interologs
Total number of interologs for this interface: 1