Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
StructureStructure (with hetatm)
Chain
Chainbow
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Focus on
InterfaceRNA
Protein
All
Show chains
Interface
show interface as licoriceCommon contacts -
| 4YBB_DW
|
4YBB_DA
|
7ASM_T
|
7ASM_A
|
Conserved?
|
|---|---|---|---|---|
| DW:46 [LYS] | DA:1039 [A] | T:46 [VAL] | A:1083 [G] | ✔ |
| DW:46 [LYS] | DA:1040 [A] | T:46 [VAL] | A:1084 [U] | ✔ |
| DW:83 [LYS] | DA:1119 [U] | T:83 [LYS] | A:1163 [U] | ✔ |
| DW:84 [PRO] | DA:1118 [C] | T:84 [ASN] | A:1162 [C] | ✔ |
| DW:83 [LYS] | DA:1118 [C] | T:83 [LYS] | A:1162 [C] | ❌ 7ASM_T_A |
| DW:84 [PRO] | DA:1117 [C] | T:84 [ASN] | A:1161 [A] | ❌ 7ASM_A:1161 no longer at interface |
| DW:51 [GLN] | DA:1041 [G] | T:50 [LYS] | A:1085 [U] | ❌ 4YBB_DW:51, 4YBB_DA:1041 no longer at interface |
| DW:53 [LYS] | DA:1041 [G] | T:53 [ARG] | A:1085 [U] | ❌ 4YBB_DW:53, 4YBB_DA:1041 no longer at interface |
| DW:85 [LYS] | DA:1118 [C] | T:85 [GLN] | A:1162 [C] | ❌ 7ASM_T:85 no longer at interface |
| DW:85 [LYS] | DA:1119 [U] | T:85 [GLN] | A:1163 [U] | ❌ 7ASM_T:85 no longer at interface |
| DW:51 [GLN] | DA:1040 [A] | T:50 [LYS] | A:1084 [U] | ❌ 4YBB_DW:51 no longer at interface |
| DW:53 [LYS] | DA:1040 [A] | T:53 [ARG] | A:1084 [U] | ❌ 4YBB_DW:53 no longer at interface |
Export the table of contacts
Properties of this pair
|
Common ECOD label(s) |
Common RFAM label(s) |
Interface TM-score |
Interface RMSD |
Percentage identity |
Protein TM-score |
RNA TM-score |
Protein coverage |
RNA coverage |
Percentage conservation |
Apolar conservation |
H-bond conservation |
Percentage switching out |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Ribosomal protein L25-like | Bacterial large subunit ribosomal RNA | 0.95 | 2.74 | 0.20 | 0.82 | 0.95 | 0.6 | 0.8 | 0.36 | 0.00 | 0.00 | 0.88 |
Other pairs involving 4YBB_DW_DA or 7ASM_T_A
Total number of entries: 1