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All interfaces > All interologs > Interface groups > group17 > 7ASM_T_A

Interface analysis

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Protein

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Licorice
Surface

RNA

Cartoon
Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Interface

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Rim - Core

Contacts -

7ASM_T
7ASM_A
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
T:46 [VAL] A:1083 [G] 4.96 A:1160 [C] 38.2
T:46 [VAL] A:1084 [U] 4.99 A:1159 [A] 38.2
T:50 [LYS] A:1084 [U] 4.29 A:1159 [A] 64.4
T:50 [LYS] A:1085 [U] 3.73 A:1158 [G] 64.4
T:53 [ARG] A:1084 [U] 4.49 A:1159 [A] 55.1
T:53 [ARG] A:1085 [U] 4.57 A:1158 [G] 55.1
T:83 [LYS] A:1163 [U] 4.92 A:1080 [G] 53.1
T:84 [ASN] A:1162 [C] 4.79 A:1081 [G] 39.4

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group17 7ASM_T_A T: 50s ribosomal protein l25, Staphylococcus aureus (natural) A: 23s rRNA, Staphylococcus aureus (genetically engineered) Q2FJE0 Ribosomal protein L25-like Bacterial large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 1

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4YBB_DW_DA 7ASM_T_A 0.36 0.95 2.74 0.2 Ribosomal protein L25-like Bacterial large subunit ribosomal RNA compare